1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaatatgttttgcttaatctttcttattctgttttttcacaaagggtttcaaattgtttttttgctttgttttttttttttgaaaaaaatctctttgttttttctccatcagATGTTGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCA
species | Glycine max |
transcript | GLYMA06G11330.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGACCAACAACAACTACAAGTGATCTCAGGGGATTGTGCTACCAAGAAG ATGTTGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTEST: gi|18733482|gb|BM527631.1|BM527631
genomic: GGGACCAACAACAACTACAAGTGATCTCAGGGGATTGTGCTACCAAGAAGgtaatatgtt ... tctccatcagATGTTGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
EST: GGGACCAACAACAACTACAAGTGATCTCAGGGGATTGTGCTACCAAGAAG ATGTTGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTEST: gi|24136962|gb|BU927472.1|BU927472
genomic: GGGACCAACAACAACTACAAGTGATCTCAGGGGATTGTGCTACCAAGAAGgtaatatgtt ... tctccatcagATGTTGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
EST: GGGACCAACAACAACTACAAGTGATCTCAGGGGATTGTGCTACCAAGAAG ATGTTGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
genomic: GGGACCAACAACAACTACAAGTGATCTCAGGGGATTGTGCTACCAAGAAGgtaatatgtt ... tctccatcagATGTTGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
ttttttgctttgttttttttttttgaaaaaaatctctttgttttttctccatcagATGTTGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCA
tctctttgttttttct CT-rich tract
tttgtttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatgttttgcttaatctttcttattctgttttttcacaaagggtttcaaattgtttttttgctttgttttttttttttgaaaaaaatctctttgttttttctccatcagATGTTGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC