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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgctttttaaaattttaatgtttaagtatttccctgttgttttcgtcttcaaattaaagaatgctgagtttcatttccatgtcatttgacagAATCGGATGGGGGTTGGTCGATTACATTTGGTCACTATAAATCTTTCACCAAGTAATTTG

Basic information

species Glycine max
transcript GLYMA06G10060.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213605603|gb|DB970718.1|DB970718
EST:     CTCATGATGTTAGGCTCAACAGTAATATTGGATTCTGTAGTTTCCATCAC                         AATCGGATGGGGGTTGGTCGATTACATTTGGTCACTATAAATCTTTCACCA
genomic: CTCATGATGTTAGGCTCAACAGTAATATTGGATTCTGTAGTTTCCATCACgtgcgtgctt ... catttgacagAATCGGATGGGGGTTGGTCGATTACATTTGGTCACTATAAATCTTTCACCA
EST: gi|213598032|gb|DB972220.1|DB972220
EST:     CTCATGATGTTAGGCTCAACAGTAATATTGGATTCTGTAGTTTCCATCAC                         AATCGGATGGGGGTTGGTCGATTACATTTGGTCACTATAAATCTTTCACCA
genomic: CTCATGATGTTAGGCTCAACAGTAATATTGGATTCTGTAGTTTCCATCACgtgcgtgctt ... catttgacagAATCGGATGGGGGTTGGTCGATTACATTTGGTCACTATAAATCTTTCACCA
EST: gi|213618231|gb|DB973001.1|DB973001
EST:     CTCATGATGTTAGGCTCAACAGTAATATTGGATTCTGTAGTTTCCATCAC                         AATCGGNATGGGGGTTGGTCGATTACATTTGGTCACTATAAATCTTTCACC
genomic: CTCATGATGTTAGGCTCAACAGTAATATTGGATTCTGTAGTTTCCATCACgtgcgtgctt ... catttgacagAATCGG-ATGGGGGTTGGTCGATTACATTTGGTCACTATAAATCTTTCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttcgtcttcaaattaaagaatgctgagtttcatttccatgtcatttgacagAATCGGATGGGGGTTGGTCGATTACATTTGGTCACTATAAATCTTTCACCAAGTAATTTG
          ttcaaattaaagaat  TA-rich tract