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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcctcctattgtcactctttaatctgtccctacctattaatatgttcagatgtccttgctatttcatatttttagccatttaatatcatatgcaattcttataatcattaaactgatatgacttttgggtttgacagGAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGTTCACCTCCTGGTTGTTCAAAAATATTGAATTGGCATCTCCATTTGACTG

Basic information

species Glycine max
transcript GLYMA06G09560.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09560.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0001g08150.t01 (Vitis vinifera), 3'ss of exon 2
gtatgcctcctattgtcactctttaatctgtccctacctattaatatgttcagatgtccttgctatttcatatttttagccatttaatatcatatgcaattcttataatcattaaactgatat-gacttttgggtttgacagGAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGTTCACCTCCTGGTTGTTCAAAAATATTGAATTGGCATCTCCATTTGACTG
                                                                     |||  |     | |   | ||  |  |  || |||| |   ||  |    | || ||| ||    ||| |||||| ||||| |||||||| ||| ||||||||||||||||||||||||||||  ||||| ||||||||||||  ||| |||| |||||||| ||||||   |
-------------------------------------------------------------------gtatacatcatttcgtcgcaaattttg-gttatgcttacataaatccagggtacattgacattgtcttttcacagGAAACCACATTTATAGAGCAACTGGTGGAAGATGAAAGTCAAATGGAAGGGACACCTGCTGGTTGTTCAAGGATAATGAACTGGCATCTTCATTTGGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298198820|gb|HO042183.1|HO042183
EST:     CTTCTTCAAATCCCATACGACAGTTAGACACAGTGAAGGAGGGTTTTCAA                         GAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGT
genomic: CTTCTTCAAATCCCATACGACAGTTAGACACAGTGAAGGAGGGTTTTCAAgtatgcctcc ... ggtttgacagGAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatcatatgcaattcttataatcattaaactgatatgacttttgggtttgacagGAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGTTCACCTCCTGGTTGTTCAAAAATATTGAATTGGCATCTCCATTTGACTG
                            aactgat  putative branch site (score: 3)
           aattcttataatcatt  TA-rich tract