1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagttaatcggtttatttatgtgattttgatctgagaacggaatgtgttctgttcgaaacgttgatttttctgtgttttgcatcgtcagGCAGTATTTCGTGCACATGGACGACACTGTTCCTCAGAAG
species | Glycine max |
transcript | GLYMA06G09320.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACATATCCGAATCCGCTTCGATCCAATCCTGCTTACTCGGTTGTTAA GCAGTATTTCGTGCATATGGACGACACTGTTCCTCAGAAGEST: gi|298183801|gb|HO029014.1|HO029014
genomic: ACATATCCGAATCCGCTTCGATCCAATCCTGCTTACTCGGTTGTTAAgtaagttaat ... gcatcgtcagGCAGTATTTCGTGCACATGGACGACACTGTTCCTCAGAAG
EST: ACATATCCGAATCCGCTTCGATCCAATCCTGCCTACTCGGTTGTTAA GCAGTATTTCGTGCACATGGACGACACTGTTCCTCAGAAGEST: gi|18041257|gb|BM309559.1|BM309559
genomic: ACATATCCGAATCCGCTTCGATCCAATCCTGCTTACTCGGTTGTTAAgtaagttaat ... gcatcgtcagGCAGTATTTCGTGCACATGGACGACACTGTTCCTCAGAAG
EST: ACATATCCGAATCCGCTTCGATCCAATCCTGCTTACTCGGTTGTTAA GCAGTATTTCGTGCACATGGACGACACTGTTCCTCAGAAG
genomic: ACATATCCGAATCCGCTTCGATCCAATCCTGCTTACTCGGTTGTTAAgtaagttaat ... gcatcgtcagGCAGTATTTCGTGCACATGGACGACACTGTTCCTCAGAAG
agaacggaatgtgttctgttcgaaacgttgatttttctgtgttttgcatcgtcagGCAGTATTTCGTGCACATGGACGACACTGTTCCTCAGAAG
cgttgat putative branch site (score: 5)
ttgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttaatcggtttatttatgtgattttgatctgagaacggaatgtgttctgttcgaaacgttgatttttctgtgttttgcatcgtcagGCAGTATTTCGTGCACATGGACGACACTGTTCCTCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA