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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataataatactatactatacttaacaatcttcctttaattctttctttcattgcatactattttaacttctcttatgattcctagttttgtttggttaaattaatatatcaatcaagaggcttatgcaaacaaaaatgaatactcattactcataactattgcaatgattttatttcatcatgtgatgtatgaacagGCTACGCTTGCCACAACAGACACAAACACAAGCTGTGAGTCGGTGGTGACGAGTGGTCAGCGGAACTTGACACCGCAGCAGCATCCACCGAGGGATGCTA

Basic information

species Glycine max
transcript GLYMA06G09100.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09100.1 (Glycine max), 3'ss of exon 2
lower sequence: AT4G32880.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaataataatactatactatacttaacaatcttcctttaattctttctttcattgcatactattttaacttctcttatgattcctagttttgtttggttaaattaatatatcaatcaagaggcttatgcaaacaaaaatgaatactcattactcataactattgcaatgattttatttcatcatgtgatgtatgaacagGCTACGCTTGCCACAACAGACACAAACACAAGCTGTGAGTCGGTGGTGACGAGTGGTCAGCGGAACTTGACACCGCAGCAGCATCCACCGAGGGATGCTA------
                                                                                                           || ||  || ||     ||     |   | | | | || |  | || ||||| |   | |||     || |   ||        | | | ||||  |   | || ||      |||| | || ||||||||||| ||||||||||||||||| |   ||||||| || || || || || |   | |||||||      
----------------------------------------------------------------------------------------------------------gtagatagattaatttatttgattcattcacattaattagt--tgacacataagttaaggaattgaaatagtctgtcgc------tctcagCAGGGGAATTTGGCTAC------CACAGATACTAGCTGTGAGTCAGTGGTGACGAGTGGTCAACACCACTTGACCCCTCAACATCAGCCTC---GTGATGCTAGTCCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcattactcataactattgcaatgattttatttcatcatgtgatgtatgaacagGCTACGCTTGCCACAACAGACACAAACACAAGCTGTGAGTCGGTGGTGACGAGTGGTCAGCGGAACTTGACACCGCAGCAGCATCCACCGAGGGATGCTA
        tcataac  putative branch site (score: 2)
                     aatgattttatttcat  TA-rich tract