1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atgagaatgtcctgttgtaatgtaactaacaattatcgaatataatccttccactggaaacttgtgagttttactaatactgtgaattgttccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCATAAATGACGT
species | Glycine max |
transcript | GLYMA06G08670.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|27808994|gb|CB063416.1|CB063416
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|37997401|gb|CF808990.1|CF808990
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|151408997|gb|EV278805.1|EV278805
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|213587077|gb|DB961772.1|DB961772
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|4397049|gb|AI496046.1|AI496046
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: TCCAAGTCCAGTTAAGCTCAACTTNGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTT-GAATGTAGTGAGGCGAGTTGAACAGCAEST: gi|151394218|gb|EV264089.1|EV264089
genomic: TCCAAGTCCAGTTAAGCTCAACTT-GGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCA
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|6454608|gb|AW185291.1|AW185291
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|9986765|gb|BE660873.1|BE660873
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|151395018|gb|EV264889.1|EV264889
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|298184704|gb|HO029917.1|HO029917
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|213588877|gb|DB967957.1|DB967957
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|192307206|gb|FK001220.1|FK001220
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|298196933|gb|HO041676.1|HO041676
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|209723439|gb|BW682393.1|BW682393
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|24205360|gb|BU964613.1|BU964613
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|298196196|gb|HO044587.1|HO044587
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|7925748|gb|AW831774.1|AW831774
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|209696907|gb|BW660472.1|BW660472
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|298174108|gb|HO017444.1|HO017444
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|209719273|gb|BW679815.1|BW679815
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|151411675|gb|EV281486.1|EV281486
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|209714938|gb|BW650784.1|BW650784
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCEST: gi|18690845|gb|BM519693.1|BM519693
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
EST: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAG GAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
genomic: ATCCAAGTCCAGTTAAGCTCAACTTGGGAGTTGGTGCTTACCGAACTGAGgtgagagtga ... tccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTC
tccttccactggaaacttgtgagttttactaatactgtgaattgttccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCATAAATGACGT
tactaat putative branch site (score: 1)
ttccgttcc putative PPT
ttttactaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgagaatgtcctgttgtaatgtaactaacaattatcgaatataatccttccactggaaacttgtgagttttactaatactgtgaattgttccgttccagGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGCGAGTTGAACAGCAACTCATAAATGACGT
- - - - - cctgttg
- - - - - - - - - - - - actaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgtg