1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgttctgtcatcactcatgcaagtgttgttggttgtctttttttttttttcttttgcttgtttaagcagctgttttgatattttctgatttttttaacagATAAAATCCTCGGCAAGATGGGTGAAG
species | Glycine max |
transcript | GLYMA06G08480.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGAGAGGGCCATTATGTCTTCAATCTTGGCGAAAATCTCACTCCTAGAT ATAAAATCCTCGGCAAGATGGGTGAAGEST: gi|14011079|gb|BG726001.1|BG726001
genomic: TCGAGAGGGCCATTATGTCTTCAATCTTGGCGAAAATCTCACTCCTAGATgtaatttttt ... tttttaacagATAAAATCCTCGGCAAGATGGGTGAAG
EST: TCGAGAGGGCCATTATGTCTTCAATCTTGGCGAAAATCTCACTCCTAGAT ATAAAATCCTCGGCAAGATGGGTGAAGEST: gi|120530033|gb|EH258167.1|EH258167
genomic: TCGAGAGGGCCATTATGTCTTCAATCTTGGCGAAAATCTCACTCCTAGATgtaatttttt ... tttttaacagATAAAATCCTCGGCAAGATGGGTGAAG
EST: TCGAGAGGGCCATTATGTCTTCAATCTTGGCGAAAATCTCACTCCTAGAT ATAAAATCCTCGGCAAGATGGGTGAAGEST: gi|298169434|gb|HO020794.1|HO020794
genomic: TCGAGAGGGCCATTATGTCTTCAATCTTGGCGAAAATCTCACTCCTAGATgtaatttttt ... tttttaacagATAAAATCCTCGGCAAGATGGGTGAAG
EST: TCGAGAGGGCCATTATGTCTTCAATCTTGGCGAAAATCTCACTCCTAGAT ATAAAATCCTCGGCAAGATGGGTGAAG
genomic: TCGAGAGGGCCATTATGTCTTCAATCTTGGCGAAAATCTCACTCCTAGATgtaatttttt ... tttttaacagATAAAATCCTCGGCAAGATGGGTGAAG
tttttcttttgcttgtttaagcagctgttttgatattttctgatttttttaacagATAAAATCCTCGGCAAGATGGGTGAAG
ttctgat putative branch site (score: 3)
ttttctgattttttt CT-rich tract
tgttttgatattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttctgtcatcactcatgcaagtgttgttggttgtctttttttttttttcttttgcttgtttaagcagctgttttgatattttctgatttttttaacagATAAAATCCTCGGCAAGATGGGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG