1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atagtcatctcttatgattatttcctatttctatggaatatttttttaatctaggaactttatgttgataatctctctttcctcccctccaaatttgtagCTTCAAGTTGATGGTGGTTTCAATCAGAATCTGAATTCAAAGACTTTGTCTGCTCCCAATCTCAGTGCAATGGACTACCCTGCACTTACTTCACCAGATG
species | Glycine max |
transcript | GLYMA06G06030.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTAATAGATGTGATTTACATCTGACCACTGAGATGCTCAATCAGTTAGAG CTTCAAGTTGATGGTGGTTTCAATCAGAATCTGAATTCAAAGACTCTGTCTEST: gi|207796472|gb|GD769780.1|GD769780
genomic: CTAATAGATGTGATTTACATCTGACCACTGAGATGCTCAATCAGTTAGAGgtaggttgat ... aaatttgtagCTTCAAGTTGATGGTGGTTTCAATCAGAATCTGAATTCAAAGACTTTGTCT
EST: GACCACTGAGATGCTCAATCAGTTAGAG CTTCAAGTTGATGGTGGTTTCAATCAGAATCTGAATTCAAAGACTTTGTCTEST: gi|192324671|gb|FK016832.1|FK016832
genomic: GACCACTGAGATGCTCAATCAGTTAGAGgtaggttgat ... aaatttgtagCTTCAAGTTGATGGTGGTTTCAATCAGAATCTGAATTCAAAGACTTTGTCT
EST: CTAATAGATGTGATTTACATCTGACCACTGAGATGCTCAATCAGTTAGAG CTTCAAGTTGATGGTGGTTTCAATCAGAATCTGAATTCAAAGACTTTGTCTEST: gi|19269165|gb|BM885421.1|BM885421
genomic: CTAATAGATGTGATTTACATCTGACCACTGAGATGCTCAATCAGTTAGAGgtaggttgat ... aaatttgtagCTTCAAGTTGATGGTGGTTTCAATCAGAATCTGAATTCAAAGACTTTGTCT
EST: CTAATAGATGTGATTTACATCTGACCACTGAGATGCTCAATCAGTTAGAG CTTCAAGTTGATGGTGGTTTCAATCAGAATCTGAATTCAAAGACTTTGTCTEST: gi|12688941|gb|BG155277.1|BG155277
genomic: CTAATAGATGTGATTTACATCTGACCACTGAGATGCTCAATCAGTTAGAGgtaggttgat ... aaatttgtagCTTCAAGTTGATGGTGGTTTCAATCAGAATCTGAATTCAAAGACTTTGTCT
EST: CTAATATATGTGATTTACATCTGACCACTGAGATGCTCAATCAGTTAGAG CTTCAAGTTGATGGTGGTTTCAATCAGAAT
genomic: CTAATAGATGTGATTTACATCTGACCACTGAGATGCTCAATCAGTTAGAGgtaggttgat ... aaatttgtagCTTCAAGTTGATGGTGGTTTCAATCAGAAT
ttaatctaggaactttatgttgataatctctctttcctcccctccaaatttgtagCTTCAAGTTGATGGTGGTTTCAATCAGAATCTGAATTCAAAGACTTTGTCTGCTCCCAATCTCAGTGCAATGGACTACCCTGCACTTACTTCACCAGATG
tctctctttcctcccc CT-rich tract
tttatgttgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagtcatctcttatgattatttcctatttctatggaatatttttttaatctaggaactttatgttgataatctctctttcctcccctccaaatttgtagCTTCAAGTTGATGGTGGTTTCAATCAGAATCTGAATTCAAAGACTTTGTCTGCTCCCAATCTCAGTGCAATGGACTACCCTGCACTTACTTCACCAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG