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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagactcaaatttctaggatttttatcctgtaaatttaatattatttattcttcatatctcttttgttaacctgtgtttatgtggtggtggtttcagGGGAAATGGAGCTAGTGTTATCCGCATTGTTCCGTATGCAGCCTTGCATTTTATGACATATGAGCGCTACAAAAGTTGGATCTTGAATAATTATCCTGTG

Basic information

species Glycine max
transcript GLYMA06G05550.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G05550.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0008g01060.t01 (Vitis vinifera), 3'ss of exon 2
gtaagactcaaatttctaggatttttatcctgtaaatttaatattatttattcttcatatctcttttgttaacctgtgtttatgtggtggtggtttcagGGGAAATGGAGCTAGTGTTATCCGCATTGTTCCGTATGCAGCCTTGCATTTTATGACATATGAGCGCTACAAAAGTTGGATCTTGAATAATTATCCTGTG
||||| || || ||  |   |||||||  || |          || ||| | |   | |    ||||  |||| | || |||        ||  ||||| |||||||| ||||||||| | || ||||| || ||||||||||| |||||||||||||||||||  ||||  || ||||||||||| || |  ||||  
gtaagtctgaagttattca-atttttactctttg---------ttgttt-tccccaaaaatgtttttcctaacttatgctta------attgtcttcagAGGAAATGGTGCTAGTGTTCTTCGTATTGTACCCTATGCAGCCTTACATTTTATGACATATGAGCAGTACAGGAGCTGGATCTTGAACAACTGCCCTGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6502451|gb|AW203824.1|AW203824
EST:     CAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAA                         GGGAAATGGAGCTAGTGTTATCCGCATTGTTCCGTATGCAGCCTTGCATTT
genomic: CAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAAgtaagactca ... gtggtttcagGGGAAATGGAGCTAGTGTTATCCGCATTGTTCCGTATGCAGCCTTGCATTT
EST: gi|7685547|gb|AW756195.1|AW756195
EST:     CAATCTATGAATAAGTTACTAAAGCATGAAGGTTNTCTAGGATTATATAA                         GGGAAATGGAGCTAGTGTTATCCGCATTGTTCCGTATGCAGCCTTGCATTT
genomic: CAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAAgtaagactca ... gtggtttcagGGGAAATGGAGCTAGTGTTATCCGCATTGTTCCGTATGCAGCCTTGCATTT
EST: gi|16996901|gb|BM086273.1|BM086273
EST:     CAATCTATGAATAAGTTACTAAAGCATGAAGGGTTTCTAGGATTATATAA                         GGGAAATGGAGCTAGTGTTATCCGCATTGGTCCCG-ATGCAGCCCTGCATT
genomic: CAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAAgtaagactca ... gtggtttcagGGGAAATGGAGCTAGTGTTATCCGCATTGTTCC-GTATGCAGCCTTGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttattcttcatatctcttttgttaacctgtgtttatgtggtggtggtttcagGGGAAATGGAGCTAGTGTTATCCGCATTGTTCCGTATGCAGCCTTGCATTTTATGACATATGAGCGCTACAAAAGTTGGATCTTGAATAATTATCCTGTG
                      tgttaac  putative branch site (score: 2)
                   ttttgttaa  TA-rich tract