Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtttctgctaaaggaaaagttacatgctactacactggtctcttatgcatttgacactttcactctactgcagACAGGTTCTGGGAAAACGTACACCATGGGAACTGGCTTTAAAGATGGTTGTCAAACAGGAATAGTACCCCAAGTTATGAATGTTTTGTTTAGCAAAATTG

Basic information

species Glycine max
transcript GLYMA06G04520.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G04520.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 2
--------------------------gtatagtttctgctaaaggaaaagttacatgctactacactg-gtctcttatgcatttgacacttt---cactcta-----ctgcagACAGGTTCTGGGAAAACGTACACCATGGGAACTGGCTTTAAAGATGGTTGTCAAACAGGAATAGTACCCCAAGTTATGAATGTTTTGTTTAGCAAAATTG
                          |   | |||     ||      | |||     | | | |     |  |||  | | ||| || | |   || | |       |||||||||| ||||||||||| ||||||||||| |||||||| |||||  ||| |||||  ||| || | || ||||| ||||||| |||||| | ||| ||||
gtaaacccttctctccatgggaaactgctcaatttgaaacaatcagttacttatgcattgcaaaatcatattcctttggaaattgtcattgttgacattttgaggtgttgcagACAGGATCTGGGAAAACATACACCATGGGCACTGGCTTCAAAGACAGTTCTCAAATGGGACTAATCCCTCAAGTGATGAATGCTTTGTTCAACAAGATTG

upper sequence: GLYMA06G04520.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S237_18V6.1 (Physcomitrella patens), 3'ss of exon 2
---------------------gtatagtttctgctaaaggaaaagttac--atgctactacactggtct-cttatgcatttgacactttcactctactgcagACAGGTTCTGGGAAAACGTACACCATGGGAACTGGCTTTAAAGATGGTTGTCAAACAG---GAATAGTACCCCAAGTTATGAATGTTTTGTTTAGCAAAATTG
                     | ||    |   || ||  | | || |   ||  || | ||   || | ||  ||   ||  |  ||||  |  |  ||||||||| ||||||||||| |||||||||||||||||||  | || |||  |    || |   |  |  |||| ||||||||| |     | ||||  | ||   
actaacgtgagtgagtcccaagaattcgattgacttaaatataggtcaggaattatatttcatgtgtttactcgtggcgtt--cgttttcctttcatcgcagACAGGATCTGGGAAAACTTACACCATGGGAACTGGCTACACAGTTGGAGGCAGCACTGATGGGGTCATACCACAAGTTATGCAGACAATTTTTAAGAGAA---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttacatgctactacactggtctcttatgcatttgacactttcactctactgcagACAGGTTCTGGGAAAACGTACACCATGGGAACTGGCTTTAAAGATGGTTGTCAAACAGGAATAGTACCCCAAGTTATGAATGTTTTGTTTAGCAAAATTG
                              atttgac  putative branch site (score: 4)
                                      ctttcactct  CT-rich tract