1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagaacttagaggtgtgaaccatttgtattgtatctgcttccgttagtcacttgctgaagttaatgttgtgaaatcgttgttctaatatagGTGAAGGCTTTAGAAGCGGAGTTTTCGAGTGAAACTGAGGCAGTTAAGTTGCCCTGGCATTTGAAACAGAACATAATTGATGAGATCTTGCAGAGACTAA
species | Glycine max |
transcript | GLYMA06G04180.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAATCCAAATCCGCTGGGAATTTAAACCTGTGGAGTTAATTAAGTGG GTGAAGGCTTTAGAAGCGGAGTTTTCGAGTGAAACTGAGGCAGTTAAGTTGEST: gi|6718619|gb|AW306266.1|AW306266
genomic: TCAATCCAAATCCGCTGGGAATTTAAACCTGTGGAGTTAATTAAGTGGgtaagaactt ... tctaatatagGTGAAGGCTTTAGAAGCGGAGTTTTCGAGTGAAACTGAGGCAGTTAAGTTG
EST: AATCAATCCAAATCCGCTGGGAATTTAAACCTGTGGAGTTAATTAAGTGG GTGAAGGCTTTAGAAGCGGAGTTTTCGAGTGAAACTGAGGCAGTTAAGTTGEST: gi|9203819|gb|BE330043.1|BE330043
genomic: AATCAATCCAAATCCGCTGGGAATTTAAACCTGTGGAGTTAATTAAGTGGgtaagaactt ... tctaatatagGTGAAGGCTTTAGAAGCGGAGTTTTCGAGTGAAACTGAGGCAGTTAAGTTG
EST: ATCAATCCAAATCCGCTGGGAATTTAAACCTGTGGAGTTAATTAAGTGG GTGAAGGCTTTATAAGCGGAGTTTTCGAGTGAAACTGAGGCAGTTAAGTTG
genomic: ATCAATCCAAATCCGCTGGGAATTTAAACCTGTGGAGTTAATTAAGTGGgtaagaactt ... tctaatatagGTGAAGGCTTTAGAAGCGGAGTTTTCGAGTGAAACTGAGGCAGTTAAGTTG
gcttccgttagtcacttgctgaagttaatgttgtgaaatcgttgttctaatatagGTGAAGGCTTTAGAAGCGGAGTTTTCGAGTGAAACTGAGGCAGTTAAGTTGCCCTGGCATTTGAAACAGAACATAATTGATGAGATCTTGCAGAGACTAA
ttctaat putative branch site (score: 2)
ttgttct CT-rich tract
ttctaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacttagaggtgtgaaccatttgtattgtatctgcttccgttagtcacttgctgaagttaatgttgtgaaatcgttgttctaatatagGTGAAGGCTTTAGAAGCGGAGTTTTCGAGTGAAACTGAGGCAGTTAAGTTGCCCTGGCATTTGAAACAGAACATAATTGATGAGATCTTGCAGAGACTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC