1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgggaaatgctcctgacacctgagaagtttattgcctttttattggatcctattattagttgtgaagactttcttgatgataaatttcatttgtctttagGAATCTTTCACTTTGCACTAGAGGGAAATGCACTCAAGGCTATTGAGCTTACTGAACAGCTGGCAAAAGATATTCTAGAGAACAATAAGGATTTGCAGTT
species | Glycine max |
transcript | GLYMA06G03120.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGGGCAACGCAGCCGGCAGATTATTTGGAAGACATGGATAAAAGGAAAA GAATCTTTCACTTTGCACTAGAGGGAAATGCACTCAAGGCTATTGAGCTTAEST: gi|8283078|gb|BE020639.1|BE020639
genomic: TGGGGCAACGCAGCCGGCAGATTATTTGGAAGACATGGATAAAAGGAAAAgtaggtttgt ... ttgtctttagGAATCTTTCACTTTGCACTAGAGGGAAATGCACTCAAGGCTATTGAGCTTA
EST: TGGGGCAACGCAGCCGGCAGATTATTTGGAAGACATGGATAAAAGGAAAA GAATCTTTCACTTTGCACTAGAGGGAAATGCACTCAAGGCTATTGAGCTTA
genomic: TGGGGCAACGCAGCCGGCAGATTATTTGGAAGACATGGATAAAAGGAAAAgtaggtttgt ... ttgtctttagGAATCTTTCACTTTGCACTAGAGGGAAATGCACTCAAGGCTATTGAGCTTA
gatcctattattagttgtgaagactttcttgatgataaatttcatttgtctttagGAATCTTTCACTTTGCACTAGAGGGAAATGCACTCAAGGCTATTGAGCTTACTGAACAGCTGGCAAAAGATATTCTAGAGAACAATAAGGATTTGCAGTT
tcttgat putative branch site (score: 4)
tttcatttgtcttt putative PPT
atgataaatttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggaaatgctcctgacacctgagaagtttattgcctttttattggatcctattattagttgtgaagactttcttgatgataaatttcatttgtctttagGAATCTTTCACTTTGCACTAGAGGGAAATGCACTCAAGGCTATTGAGCTTACTGAACAGCTGGCAAAAGATATTCTAGAGAACAATAAGGATTTGCAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - -tgctcct
- - - - - - - - cacctga
- - - - - - - - - - - - - - -tattgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -agttgtg