1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgcattttttttttaatgttcaacacgcaagtttgttaagagttggttggtatttgggtattcaaccttttttttcccatgttgattttcagAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCTGAATATGACCCTGTAGCCAAGATATCAATTATTCCTCGTGGCCAAGCTGGTGGTCTCACATTTTT
species | Glycine max |
transcript | GLYMA06G02200.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAAAATGCTGTAGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATG AGGCTGGCCATGCTEST: gi|192314907|gb|FK010725.1|FK010725
genomic: GAAAAATGCTGTAGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGgtatgcattt ... tgattttcagAGGCTGGCCATGCT
EST: GAAAAATGCTGTAGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATG AGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCTGAATATGGCCCTGTAGEST: gi|151393635|gb|EV263510.1|EV263510
genomic: GAAAAATGCTGTAGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGgtatgcattt ... tgattttcagAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCTGAATATGACCCTGTAG
EST: GAAAAATGCTGTAGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATG AGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCTGAATATGACCCTGTAGEST: gi|20811366|gb|BQ295844.1|BQ295844
genomic: GAAAAATGCTGTAGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGgtatgcattt ... tgattttcagAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCTGAATATGACCCTGTAG
EST: GAAAAATGCTGTAGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATG AGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCTGAATATGACCCTGTAG
genomic: GAAAAATGCTGTAGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGgtatgcattt ... tgattttcagAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCTGAATATGACCCTGTAG
aagagttggttggtatttgggtattcaaccttttttttcccatgttgattttcagAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCTGAATATGACCCTGTAGCCAAGATATCAATTATTCCTCGTGGCCAAGCTGGTGGTCTCACATTTTT
tgttgat putative branch site (score: 4)
ccttttttttcccatg CT-rich tract
tttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcattttttttttaatgttcaacacgcaagtttgttaagagttggttggtatttgggtattcaaccttttttttcccatgttgattttcagAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCTGAATATGACCCTGTAGCCAAGATATCAATTATTCCTCGTGGCCAAGCTGGTGGTCTCACATTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG