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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgtcgtcaatttaaaggatgtgtgtgttttcatctagtttctgtaaatgattcagtggttgaattcttgggccgcttgtttgttttgttatgttgtttccagGTTATTACAAAACTCCTATACCTACTTAATCAGGGAGAGACGTTTACAAAG

Basic information

species Glycine max
transcript GLYMA06G01520.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208263070|gb|GE062490.1|GE062490
EST:     AGGCCAGGGTTTTTAATGACCCTCAACTAGATGCTAGGAGATGTTCACAG                         GTTATTACAAAACTCCTATACCTACTTAATCAGGGAGAGACGTTTACAAAG
genomic: AGGCCAGGGTTTTTAATGACCCTCAACTAGATGCTAGGAGATGTTCACAGgtttgtgtcg ... ttgtttccagGTTATTACAAAACTCCTATACCTACTTAATCAGGGAGAGACGTTTACAAAG
EST: gi|208331563|gb|GE127348.1|GE127348
EST:     TTTTTAATGACCCTCAACTAGATGCTAGGAGATGTTCACAG                         GTTATTACAAAACTCCTATACCTACTTAATCAGGGAGAGACGTTTACAAAG
genomic: TTTTTAATGACCCTCAACTAGATGCTAGGAGATGTTCACAGgtttgtgtcg ... ttgtttccagGTTATTACAAAACTCCTATACCTACTTAATCAGGGAGAGACGTTTACAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattcagtggttgaattcttgggccgcttgtttgttttgttatgttgtttccagGTTATTACAAAACTCCTATACCTACTTAATCAGGGAGAGACGTTTACAAAG
                                             ttgtttcc  CT-rich tract
                                   ttttgttat  TA-rich tract