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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatattctgtttgcatgccatacattactgtacttcttttcatttaatgtctttctaatgaagaaacttactctaaaattgtgtatggcacttttgctgactgttcagGATGCTTGTTTATGAATATGTTGACAATGGAACATTGGAACAGTGGCTTCATGGTGATGTAGGACCTGTTAGCCCCTTGCCATGGGATATAAGAATGAAG

Basic information

species Glycine max
transcript GLYMA06G01490.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01490.1 (Glycine max), 3'ss of exon 2
lower sequence: AT4G34500.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaaaatattctgtttgcatgccatacattactgtacttcttttcatttaatgtctttctaatgaagaaacttactctaaaattgtgtatggcacttttgctgactgttcagGATGCTTGTTTATGAATATGTTGACAATGGAACATTGGAACAGTGGCTTCATGGTGATGTAGGACCTGTTAGCCCCTTGCCATGGGATATAAGAATGAAG
                   ||| |  |   ||   |  ||   | | ||| |    | |||||   |||  ||| ||||| |  ||   |      |||| |   || | ||||||||||| ||||||||| |||| |||||||  ||||| |||||| | || ||||||||||| || || || ||  |  | ||||||||  | ||||||
------------------gtgctaatccaaaca--aactcaaatgaattagtaaact-ctaatttggaa--ttaatctaaca--gttagttctttctttgttccttgattagGATGCTTGTGTATGAATATATTGATAATGGAAACTTGGAGCAGTGGTTACACGGTGATGTAGGTCCGGTGAGTCCTCTTACGTGGGATATCCGCATGAAG

upper sequence: GLYMA06G01490.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv03s0063g02510.t01 (Vitis vinifera), 3'ss of exon 2
gtaaaatattctgtttgcatgccatacattactgtacttcttttcatttaatgtctttctaatgaagaaacttactcta---aaattgtgtatggcacttttgctgactgttcagGATGCTTGTTTATGAATATGTTGACAATGGAACATTGGAACAGTGGCTTCATGGTGATGTAGGACCTGTTAGCCCCTTGCCATGGGATATAAGAATGAAG
|||     |  | |   | ||   |   | | || |  | ||     | ||| |     ||   | |    || | ||    ||    |  ||  || ||   ||| |||  ||||||||||||||||||||||||||||||||| |  ||||| |||||| | |||||||||||||| ||||| || ||  |  ||||||||||  | ||||||
gtaggccttattatccacttggt-tctgtaattgaatgtttt---gatgaatatgagaatagatacgtccttttcactgcctaatccatccattacatttccactggctgaacagGATGCTTGTTTATGAATATGTTGACAATGGCAATTTGGAGCAGTGGTTGCATGGTGATGTAGGGCCTGTCAGTCCTCTAACATGGGATATTCGGATGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298182116|gb|HO026291.1|HO026291
EST:     CATAAGAATTTGGTGGGGTTAGTTGGATATTGCGCAGAAGGTGCTCAAAG                         GATGCTTGTTTATGAATATGTTGACAATGGAACATTGGAACAGTGGCTTCA
genomic: CATAAGAATTTGGTGGGGTTAGTTGGATATTGCGCAGAAGGTGCTCAAAGgtaaaatatt ... gactgttcagGATGCTTGTTTATGAATATGTTGACAATGGAACATTGGAACAGTGGCTTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaatgaagaaacttactctaaaattgtgtatggcacttttgctgactgttcagGATGCTTGTTTATGAATATGTTGACAATGGAACATTGGAACAGTGGCTTCATGGTGATGTAGGACCTGTTAGCCCCTTGCCATGGGATATAAGAATGAAG
                                         tgctgac  putative branch site (score: 2)
                  tctaaaatt  TA-rich tract