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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccactctcccattctcaaattctaaatattatattgtctctctgcaactttttatatatacttcgatctcaatgtatgtatctatctgtttttaacacttacaacttaactattgcagTGGTTTGAGGTTCTTGATGGGCTCCTCGGGAAGCACTGGAGAAACGTGGGCTTGGCCTTCAACTGCACATTTCTTCTATTTGGATCTGTTATCCAACTCA

Basic information

species Glycine max
transcript GLYMA06G00690.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G00690.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os10g05690.1 (Oryza sativa), 3'ss of exon 1
gttccactctcccattctcaaattctaaatattatattgtctctctgcaactttttatatatacttcgatctcaatgtatgtatctatctgtttttaacacttacaacttaactattgcagTGGTTTGAGGTTCTTGATGGGCTCCTCGGGAAGCACTGGAGAAACGTGGGCTTGGCCTTCAACTGCACATTTCTTCTATTTGGATCTGTTATCCAACTCA
                 |  |   ||   | |||||| | ||  ||   |    |  | || |  ||| |  | || |||  |||  |  ||  |       ||||  ||   | |  |||||||||||||| || |||||||| || |||| ||||||||| || |||||  |||||||||||||||| ||| | || || || || || |||||||| |
-----------------tttatggctggct-ttatatagccta-ctattatacctgctcta-atatcgttaacgatatataaatcagtacgtgatatggtgatacatgttt-ttgtaccagTGGTTTGAGGTGCTGGATGGGCTACTGGGGAGGCACTGGAGGAATGTGGGACTGGCCTTCAACTGCACGTTTTTGCTGTTCGGGTCGGTGATCCAACTGA

upper sequence: GLYMA06G00690.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os03g14080.1 (Oryza sativa), 3'ss of exon 2
gttccactctcccattctcaaattctaaatattatattgtctctctgcaactttttatatatacttcgatctcaatgtatgtatctatctgtttttaacacttacaacttaactattgcagTGGTTTGAGGTTCTTGATGGGCTCCTCGGGAAGCACTGGAGAAACGTGGGCTTGGCCTTCAACTGCACATTTCTTCTATTTGGATCTGTTATCCAACTCA
          |  |  ||  | |  | ||    || | | | |  | |    || | |      |  | |||  | ||    | |     |  || |||  ||       |     |||||||||| ||||| || || || || || |||| ||| ||||||||||| ||| |||||||||||||||| || || || || || || || ||||| ||||
-----gtaaacaaaaactacattgttcaaatccatttcgccgccgtacggtcttctcttctctgtatgttctgtaagttcagaccctgaagacttcaaccattgatgtgca-----tgcagTGGTTCGAGGTGCTGGACGGCCTGCTGGGGAGGCATTGGAGAAACGTCGGCCTGGCCTTCAACTGCACCTTCCTACTCTTCGGCTCCGTCATCCAGCTCA

upper sequence: GLYMA06G00690.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 2
------------------gttccactctcccattctcaaattctaaatattatattgtctctctgcaacttt---ttatatatacttcgatctcaatgtatg-----tatctatctgtttttaacacttacaacttaactattgcagTGGTTTGAGGTTCTTGATGGGCTCCTCGGGAAGCACTGGAGAAACGTGGGCTTGGCCTTCAACTGCACATTTCTTCTATTTGGATCTGTTATCCAACTCA
                    |  |     | |||  | |  | ||  | | || |||| | |    || |||   ||  ||  ||  |      | | | ||     | |  | |  |  ||  |  ||    ||        |||||||||||||||||| |||||||| || |||||||||||||| ||||| ||| |   |||||||||||| || || || || || || || ||||| ||||
gtgcgtgtgtcatgtgtatatatatatgactatttgctagctatacttgt-attttgtttgttccaaattttggtttgaattaacaccatcagaagtttgtggaaattctacaccaataattgtcttttttttctggggagccgcagTGGTTTGAGGTTCTGGATGGGCTACTGGGGAAGCACTGGAGGAACGTCGGCCTCTTCTTCAACTGCACTTTCCTCCTCTTCGGCTCCGTCATCCAGCTCA

upper sequence: GLYMA06G00690.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G149481_T05 (Zea mays), 3'ss of exon 3
gttccactctcccattctcaaattctaaatattatattgtctctctgcaactttttatatatacttcgatctcaatgtatgtatctatctgtttttaacacttacaacttaactattgcagTG-GTTTGAGGTTCTTGATGGGCTCCTCGGGAAGCACTGGAGAAACGTGGGCTTGGCCTTCAACTGCACATTTCTTCTATTTGGATCTGTTATCCAACTCA--------------------------------
                                                                         ||  | |||  |   | |  |  ||     ||  | |   |  |||||   |  ||       |  |   |  ||||||| ||||||||| ||||| ||| |||||||||||||||| || || || || || || || ||||| ||||                                
---------------------------------------------------------------------gaaaaaaatttgttgcagccgggctgcaa-----acggcctggtt--tgcagcccggctgcaacaaatttttttccgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGCTCGGTCATCCAGCTCATCGCATGCGCAAGGTAAGGTTGCTTGCTTGCT

upper sequence: GLYMA06G00690.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G149481_T02 (Zea mays), 3'ss of exon 2
gttccactctcccattctcaaattctaaatattatattgtctctctgcaactttttatatatacttcgatctcaatgtatgtatctatctgtttttaacacttacaacttaactattgcagTG-GTTTGAGGTTCTTGATGGGCTCCTCGGGAAGCACTGGAGAAACGTGGGCTTGGCCTTCAACTGCACATTTCTTCTATTTGGATCTGTTATCCAACTCA-------------
                                                                         ||  | |||  |   | |  |  ||     ||  | |   |  |||||   |  ||       |  |   |  ||||||| ||||||||| ||||| ||| |||||||||||||||| || || || || || || || ||||| ||||             
---------------------------------------------------------------------gaaaaaaatttgttgcagccgggctgcaa-----acggcctggtt--tgcagcccggctgcaacaaatttttttccgctcgggagGCACTGGAGGAACGTCGGCCTGGCCTTCAACTGCACGTTCCTGCTCTTCGGCTCGGTCATCCAGCTCATCGCATGCGCAAG

upper sequence: GLYMA06G00690.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G21050.1 (Arabidopsis thaliana), 3'ss of exon 2
gttccactctcccattctcaaattctaaatattatattgtctctctgcaactttttatatatacttcgatctcaatgtatgtatctatctgtttttaacacttacaacttaactattgcagTGGTTTGAGGTTCTTGATGGGCTCCTCGGGAAGCACTGGAGAAACGTGGGCTTGGCCTTCAACTGCACATTTCTTCTATTTGGATCTGTTATCCAACTCA
                             |  | || ||    | |  |   ||  |  ||||  ||   |    | | ||||   |    |||   |   ||     ||||    || ||||||||||||||||||||||  | || |||||||| ||||| || || || || ||||| |||||||| || ||||| ||||||||||| || |||||||
---------------------------gtttctttactgatcttttctattattcaaagtatatatctgacatgttttttgtacaaaaacatttgacatg-ttgttggttaatg--tgaagTGGTTTGAGGTTCTTGATGGATTGCTTGGGAAGCATTGGAGGAATGTTGGTTTAGCCTTTAACTGCACCTTCCTTCTCTTTGGATCTGTCATTCAACTCA

upper sequence: GLYMA06G00690.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 3'ss of exon 2
gttccactc--tcccattctcaaattctaaatattatattgtctctctgcaactttttatatatacttcgatctcaatgtatgtatctatctgtttttaacacttacaacttaactattgcagTGGTTTGAGGTTCTTGATGGGCTCCTCGGGAAGCACTGGAGAAACGTGGGCTTGGCCTTCAACTGCACATTTCTTCTATTTGGATCTGTTATCCAACTCA
||     ||  | | | || | | ||||      | |  |  | || | | |  ||||  ||  | |||     | |  |  |  |||  |  |||       || |   | ||       |||||||||| |||||||||||||| || || || |||||||| |||||||| ||||| ||||||||||| |||||||| |||||||| || || |||||||
gtcttgatcagtactactccccatttctt----ctctcctaccactgttccatctttttgatccatttc-----ccacatggggttctcacactttcatgtgttttcttgtcaaa------agTGGTTTGAAGTTCTTGATGGGCTGCTTGGCAAACACTGGAGGAACGTGGGGTTGGCTTTCAACTGCACTTTTCTTCTGTTTGGATCCGTGATTCAACTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatctcaatgtatgtatctatctgtttttaacacttacaacttaactattgcagTGGTTTGAGGTTCTTGATGGGCTCCTCGGGAAGCACTGGAGAAACGTGGGCTTGGCCTTCAACTGCACATTTCTTCTATTTGGATCTGTTATCCAACTCA
                       tgtttttaa  TA-rich tract