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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcagtaagaatagaagggaggaggagtctttcatatttaaaaatgaaaggataaaatgtactaaaaggctgattgtttctcagtatgttctttatgacagGTCAAATGCTATATGAAGCAATTGCTATCTGGCCTTGAGCATTGCCACAGCAGAGGTGTTTTGCACCGTGATATTAAGGGTTCCAATCTGCTTATTGACA

Basic information

species Glycine max
transcript GLYMA05G38410.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G38410.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv17s0000g00620.t01 (Vitis vinifera), 3'ss of exon 2
tcagtaagaatagaagggaggaggagtctttcatatttaaaaatgaaaggataaaatgtactaaaaggctgattgt---ttctcagtatgttctttatgacagGTCAAATGCTATATGAAGCAATTGCTATCTGGCCTTGAGCATTGCCACAGCAGAGGTGTTTTGCACCGTGATATTAAGGGTTCCAATCTGCTTATTGACA
    |  |  || ||  |        | |    ||  | ||  |           ||    |  | || |   ||    |||||| | | |||  | |  ||||||||||||| |||||||||||| || ||||| ||||||||||| |||| |  ||||||| |||| || ||||| ||||||||||||||| | ||  |||
---atgggtctaaaattgcccttacatgtaaagtaaattaatctcctttttaggtattccttttatggttagctgcccattctcaatgtcttccctttcgcagGTCAAATGCTTTATGAAGCAATTACTCTCTGGGCTTGAGCATTGTCACAACCAAGGTGTTCTGCATCGAGATATCAAGGGTTCCAATCTGTTAATCAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22523556|gb|BU082367.1|BU082367
EST:     ATCTTGCTGGTCTTTCAGCTGCTGTTGGTGTCAAATTCTCTGAGCCACAG                         GTCAAATGCTATATGAAGCAATTGCTATCTGGCCTTGAGCATTGCCACAGC
genomic: ATCTTGCTGGTCTTTCAGCTGCTGTTGGTGTCAAATTCTCTGAGCCACAGgtaccactat ... tttatgacagGTCAAATGCTATATGAAGCAATTGCTATCTGGCCTTGAGCATTGCCACAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaggataaaatgtactaaaaggctgattgtttctcagtatgttctttatgacagGTCAAATGCTATATGAAGCAATTGCTATCTGGCCTTGAGCATTGCCACAGCAGAGGTGTTTTGCACCGTGATATTAAGGGTTCCAATCTGCTTATTGACA
                                        tgttcttt  CT-rich tract
     ataaaatgtactaaaa  TA-rich tract