1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gttccgttttttttttttttatgtttcttcttcttttttatttttgttacttataatcattcttttatcgtgcttttctggttaggtttcttgaagctttaagattccaactgcctcttaattacttcatttattcgcgtggtcttgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCCTATGAAGTATGACCAAATAGCAGAATTGCTGAATGGCATTGCTGAGAGG
species | Glycine max |
transcript | GLYMA05G37850.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAG AATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCCEST: gi|20449385|gb|BQ253509.1|BQ253509
genomic: GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAGgttccgtttt ... ggtcttgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC
EST: GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAG AATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCCEST: gi|213590516|gb|DB968094.1|DB968094
genomic: GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAGgttccgtttt ... ggtcttgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC
EST: GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAG AATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCCEST: gi|192303373|gb|FG997431.1|FG997431
genomic: GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAGgttccgtttt ... ggtcttgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC
EST: GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAG AATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCCEST: gi|209718854|gb|BW669041.1|BW669041
genomic: GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAGgttccgtttt ... ggtcttgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC
EST: GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAG AATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCCEST: gi|213613811|gb|DB961308.1|DB961308
genomic: GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAGgttccgtttt ... ggtcttgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC
EST: GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAG AATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC
genomic: GATCTCGTCGATTATCTTGCCTCCGGTTGCAAGCCCAAGGATAAATGGAGgttccgtttt ... ggtcttgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCC
gctttaagattccaactgcctcttaattacttcatttattcgcgtggtcttgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCCTATGAAGTATGACCAAATAGCAGAATTGCTGAATGGCATTGCTGAGAGG
tcttaat putative branch site (score: 3)
ttaattacttcattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttccgttttttttttttttatgtttcttcttcttttttatttttgttacttataatcattcttttatcgtgcttttctggttaggtttcttgaagctttaagattccaactgcctcttaattacttcatttattcgcgtggtcttgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGATTGGAAGCTTGCGTCCTATGAAGTATGACCAAATAGCAGAATTGCTGAATGGCATTGCTGAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG