1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacctttttttgttattttaatagtaaatttgttcggggttattttttattataaatgttttgttcgtagttgaatttagatgttacatgtagtagtaatttatttatgttggtgttgtgggtttttgacaattagGTGGGAGACGGGAACACTGACCATTACTGTTGGCAAAGGCCAGAGGACATGACAACCGACCGTCATGCCTACAAGATCGATCCAAGCAATCCCGGGTCGG
species | Glycine max |
transcript | GLYMA05G36930.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGACTACTTCATCAAAGCTCACCCTCAACCCAATGTTCTCTACGGAGAG GTGGGAGACGGGAACACTGACCATTACTGTTGGCAAAGGCCAGAGGACATGEST: gi|21677228|gb|BQ629579.1|BQ629579
genomic: CGGACTACTTCATCAAAGCTCACCCTCAACCCAATGTTCTCTACGGAGAGgtaccttttt ... tgacaattagGTGGGAGACGGGAACACTGACCATTACTGTTGGCAAAGGCCAGAGGACATG
EST: CGGACTACTTCATCAAAGCTCACCCTCAACCCAATGTTCTCTACGGAGAG GTGGGAGACGGGAACACTGACCATTACTGTTGGCAAAGGCCAGAGGACATGEST: gi|24135951|gb|BU926461.1|BU926461
genomic: CGGACTACTTCATCAAAGCTCACCCTCAACCCAATGTTCTCTACGGAGAGgtaccttttt ... tgacaattagGTGGGAGACGGGAACACTGACCATTACTGTTGGCAAAGGCCAGAGGACATG
EST: CGGACTACTTCATCAAAGCTCACCCTCAACCCAATGTTCTCTACGGAGAG GTGGGAGACGGGAACACTGACCATTACTGTTGGGAAAGGGCAGAAGACATG
genomic: CGGACTACTTCATCAAAGCTCACCCTCAACCCAATGTTCTCTACGGAGAGgtaccttttt ... tgacaattagGTGGGAGACGGGAACACTGACCATTACTGTTGGCAAAGGCCAGAGGACATG
tgttacatgtagtagtaatttatttatgttggtgttgtgggtttttgacaattagGTGGGAGACGGGAACACTGACCATTACTGTTGGCAAAGGCCAGAGGACATGACAACCGACCGTCATGCCTACAAGATCGATCCAAGCAATCCCGGGTCGG
ttttgac putative branch site (score: 3)
ttttt CT-rich tract
atgtagtagtaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctttttttgttattttaatagtaaatttgttcggggttattttttattataaatgttttgttcgtagttgaatttagatgttacatgtagtagtaatttatttatgttggtgttgtgggtttttgacaattagGTGGGAGACGGGAACACTGACCATTACTGTTGGCAAAGGCCAGAGGACATGACAACCGACCGTCATGCCTACAAGATCGATCCAAGCAATCCCGGGTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA