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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactctctttctttctctttcacttgtcattatgaaaatgtgttgccaacttttgtcatatatactcttttgtagCCTGGCAAGTACAAGTGGCAAACTTACAAAGAAGTGTATGACTTGGTGATGAATGTTGGCAATTCCATCCGTGCTTGTGGTTACGGGGAG

Basic information

species Glycine max
transcript GLYMA05G36910.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36910.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 2
----------------gtaaactctctttctttc---tctttcacttgtcatt-atgaaaatgtgttgccaac--ttttgtcatatatactcttttgtagCCTGGCAAGTACAAGTGGCAAACTTACAAAGAAGTGTATGACTTGGTGATGAATGTTGGCAATTCCATCCGTGCTTGTGGTTACGGGGAG
                 ||  || | | ||  |    |||   | || | |||  |    || |   || ||   ||   |  |   | ||  |||| || |||| || ||   ||||| |||||| |||||||| ||||||   |||||||| ||||| |||||||||||   |||||||      || 
gtatatggttattgttttatgctatttctccataaggtctgcaatttataatttgttttgattttcagctaaaagttacattgttgtttcttctttgcagGCTGGTAAATATGTGTGGCTAACTTATAAAGAAGTATATGACAAAGTGATGAAAGTTGGAAATTCCATCCGCAGTTGTGGTGTTAATGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacttgtcattatgaaaatgtgttgccaacttttgtcatatatactcttttgtagCCTGGCAAGTACAAGTGGCAAACTTACAAAGAAGTGTATGACTTGGTGATGAATGTTGGCAATTCCATCCGTGCTTGTGGTTACGGGGAG
                                          tactctttt  CT-rich tract
                              ttttgtcatatata  TA-rich tract