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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattgaggcattgggggaaatacataatttattaatcttttaatacaacgtgcgtttgtagcctaaatagattaaaaattagcttcttttgcagatattctgttttcgatttgaggttatttggttttgagtgctaggtaaggttttgagagtcaccattggtggtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAG

Basic information

species Glycine max
transcript GLYMA05G35260.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35260.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G047564_T03 (Zea mays), 3'ss of exon 2
gtatgattgaggcattgggggaaatacataatttattaatcttttaatacaacgtgcgtttgtagcctaaatagattaaaaattagcttcttttgcagatattctgttttcgatttgaggttatttggttttgagtgctaggtaaggttttgagagtcaccattggtggtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAG
                            | |||  ||||| || |  |       | || |||    ||| | | | |  ||| |   ||     | | |  ||||  ||          | ||||      |||   | |  | | |||  |     |  |||  ||| ||||||||| ||||||||||| |||||||  |  ||||||||||| |||||||| || ||  | ||||| |||
---------------------------gtgattc-ttaattttcttttttcttaagggtatgt----taacttgttaagcaatcaatgtcgaacacgg-tgatctgccttt---------tcattt---ccggagcattggagatgctttcaaa---tatgattcatggacaatgcagGGATGGATATTAAGGGGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAG

upper sequence: GLYMA05G35260.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0016g04290.t01 (Vitis vinifera), 3'ss of exon 2
---------------gtatgattgaggcattgggggaaatacataatttattaatcttttaatacaacgtgcgtttgtagcctaa-atagattaaaaattagcttcttttgcagatattctgtt--------ttcgatttgaggttatttggttttgagtgctaggtaaggttttgagagtcaccattggtggtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAG
                ||  | |      ||        || ||||| | || || | |||| |     |   ||||| |  ||  ||    |  || ||   || |||   |  || | | ||        || |   | | ||| | |  || |||||| |||||||| ||||||| |  |||||| ||||  |||||||| ||||||||||| ||||||||||||||||| |||||||||||||  || ||| | |||||||||
gtaacatgaagaaaaatagaactcctctgttttccctgttaaataatgttttcatgtattaa-atgtactttttttgttgtttagcatgagcttcaattttttttttttaaaatctaattttttaaaaaaattttggggtaatgttttgtaattctgagtgttaggtaagattttgaggga-accatttgtggaaaatgcagGAATGGATATTAAGGGGGTTGTTGCTGAAATTCAAAAGGACAAAACTACACCTCTTGTGCAGAAG