1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atctctattattttacttcccccctttctaacatgttaatcaattaatttattatgcaatattgatgccatgatgatgatgatatgtacatttgtcacagTTTTTTGACGGATATGGATATCATGGGACATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG
species | Glycine max |
transcript | GLYMA05G34630.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTTGAGGGTTGATTCTCTGGTGTAGTAGCAATCAGCACAATAGAAAATG TTTTTTGACGGATATGGATATCATGGGACATCATTTGAGCAGATATATCGA
genomic: CTTTGAGGGTTGATTCTCTGGTGTAGTAGCAATCAGCACAATAGAAAATGgtatgcttct ... tttgtcacagTTTTTTGACGGATATGGATATCATGGGACATCATTTGAGCAGATATATCGA
aatttattatgcaatattgatgccatgatgatgatgatatgtacatttgtcacagTTTTTTGACGGATATGGATATCATGGGACATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG
tattgat putative branch site (score: 3)
aatattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctctattattttacttcccccctttctaacatgttaatcaattaatttattatgcaatattgatgccatgatgatgatgatatgtacatttgtcacagTTTTTTGACGGATATGGATATCATGGGACATCATTTGAGCAGATATATCGATGCTACCCAGCTTCCTTTATTGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - ttccccc
- - - - - - - - - - - - - - - -catgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - tatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtac