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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctgctttcatttgtatgttgagatgctaaatatgtatggtaatattttttttctgtgttgtttgatagagtgcttgagaacatattttagactatgaaggttctgttggtattctgctgtttgtaggttcaatttgtgtctgaaaactaatcctgattttcctcgttgacagATTTTGGCATCTTGATACATGGTGTCGGAGACCAGGAGTCGTATGTTAGTGCACTAGTGCGGCTACCTATATATAATGGATCAAATATTTCTTATTTGGA

Basic information

species Glycine max
transcript GLYMA05G34450.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120492763|gb|EH220930.1|EH220930
EST:     TTCTCTCCCATCTTCCTTCAGCAGTTGTTAGATCCTCATCTAAAATCCTT                         ATTTTGGCATCTTGATACATGGTGTCGGAGACCAGGAGTCGTATGTTAGTG
genomic: TTCTCTCCCATCTTCCTTCAGCAGTTGTTAGATCCTCATCTAAAATCCTTgtaagtctgc ... tcgttgacagATTTTGGCATCTTGATACATGGTGTCGGAGACCAGGAGTCGTATGTTAGTG
EST: gi|192325266|gb|FK019137.1|FK019137
EST:     TTCTCTCCCATCTTCCTTCAGCAGTTGTTAGATCCTCATCTAAAATCCTT                         ATTTTGGCATCTTGATACATGGTGTCGGAGACCAGGAGTCGTATGTTAGTG
genomic: TTCTCTCCCATCTTCCTTCAGCAGTTGTTAGATCCTCATCTAAAATCCTTgtaagtctgc ... tcgttgacagATTTTGGCATCTTGATACATGGTGTCGGAGACCAGGAGTCGTATGTTAGTG
EST: gi|120492211|gb|EH220378.1|EH220378
EST:     TTCTCTCCCATCTTCCTTCAGCAGTTGTTAGATCCTCATCTAAAATCCTT                         ATTTTGGCATCTTGATACATGGTGTCGGAGACCAGGAGTCGTATGTTAGTG
genomic: TTCTCTCCCATCTTCCTTCAGCAGTTGTTAGATCCTCATCTAAAATCCTTgtaagtctgc ... tcgttgacagATTTTGGCATCTTGATACATGGTGTCGGAGACCAGGAGTCGTATGTTAGTG
EST: gi|6746703|gb|AW317221.1|AW317221
EST:     TTCTCTCCCATCTTCCTTCAGCAGTTGTTAGATCCTCATCTAAAATCCTT                         ATTTTGGCATCTTGATACATGGTGTCGGAGACCAGGAGTTGTATGTTAGTG
genomic: TTCTCTCCCATCTTCCTTCAGCAGTTGTTAGATCCTCATCTAAAATCCTTgtaagtctgc ... tcgttgacagATTTTGGCATCTTGATACATGGTGTCGGAGACCAGGAGTCGTATGTTAGTG
EST: gi|120492628|gb|EH220795.1|EH220795
EST:     TTCTCTCCCATCTTCCTTCAGCAGTTGTTAGATCCTCATCTAAAATCCTT                         ATTTTGGCATCTTGATACATGGTGTCGGAGACCAGGAGTCGTATGTTAGTG
genomic: TTCTCTCCCATCTTCCTTCAGCAGTTGTTAGATCCTCATCTAAAATCCTTgtaagtctgc ... tcgttgacagATTTTGGCATCTTGATACATGGTGTCGGAGACCAGGAGTCGTATGTTAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttgtaggttcaatttgtgtctgaaaactaatcctgattttcctcgttgacagATTTTGGCATCTTGATACATGGTGTCGGAGACCAGGAGTCGTATGTTAGTGCACTAGTGCGGCTACCTATATATAATGGATCAAATATTTCTTATTTGGA
                                 tcctgattttcctc  CT-rich tract
                         aaaactaat  TA-rich tract