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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctttatgttttctttctattttttaatttatgaaattcgattgtgtaaagttcatttattattaatttgctgatcttgttgttgttgtctgatcagCGTGTTGATGGGACCTACTGAGGTTCCTTCTCAGTCCACGGAGACAATTAAGATTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCT

Basic information

species Glycine max
transcript GLYMA05G34360.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34360.3 (Glycine max), 3'ss of exon 2
lower sequence: Vv03s0097g00590.t01 (Vitis vinifera), 3'ss of exon 2
-------------gtacctttat-gttttctttctattttttaatttatgaaattcgattgtgtaaagttcatttattattaat-ttgctgatcttg--ttgttgttgtctgatcagCGTGTTGATGGGACCTACTGAGGTTCCTTCTCAGTCCACGGAGACAATTAAGATTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCT
              |   ||||| ||| ||||   | ||| |  ||  |    |||  ||||||    ||  | | | || ||| ||| | ||  ||  |||||        ||||||||||| ||||| || |||||  |||||||||| ||| | || || ||||| || ||||||||||| |||||||||||| | | ||| || || |     
gtagattccccctttttgtttattgttctcttcaaagtttgttgttattatttttcttttgtgttccatttttctctcatcaatcttgataatgatgccttgttaaccatctatcagCGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAAAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296647|gb|FG991215.1|FG991215
EST:     CGTTTTGATTTCACCAAGATGCTCAATCAGAAGTTCTCCCTCAATCACAG                         CGTGTTGATGGGACTTACTGAGGTTCCTTCTCAGTCCACGGAGACAATTAA
genomic: CGTTTTGATTTCACCAAGATGCTCAATCAGAAGTTCTCCCTCAATCACAGgtacctttat ... gtctgatcagCGTGTTGATGGGACCTACTGAGGTTCCTTCTCAGTCCACGGAGACAATTAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgtaaagttcatttattattaatttgctgatcttgttgttgttgtctgatcagCGTGTTGATGGGACCTACTGAGGTTCCTTCTCAGTCCACGGAGACAATTAAGATTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCT
     aaagttcatttattat  TA-rich tract