1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cgagatacaactttctatgaatattgttaccgatggtaaaaagaaacatgaaatgttttaatctcctttttcacaattgtgtattttatttttaatccagAGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGCTTGTAGGTGGAATGATTCCACCTCCTTTGGGTACAGGATATCCTTCGCG
species | Glycine max |
transcript | GLYMA05G34280.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATGCAAGGGATTCCACCAGATATCCTGGCTGCTCATTATGGTGAAGAAG AGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGCEST: gi|24206292|gb|BU965545.1|BU965545
genomic: AATGCAAGGGATTCCACCAGATATCCTGGCTGCTCATTATGGTGAAGAAGgtaatcttgt ... tttaatccagAGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGC
EST: AATGCAAGGGATTCCACCAGATATCCTGGCTGCTCATTATGGTGAAGAAG AGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGCEST: gi|209707459|gb|BW664918.1|BW664918
genomic: AATGCAAGGGATTCCACCAGATATCCTGGCTGCTCATTATGGTGAAGAAGgtaatcttgt ... tttaatccagAGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGC
EST: AATGCAAGGGATTCCACCAGATATCCTGGCTGCTCATTATGGTGAAGAAG AGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGCEST: gi|17153053|gb|BM142986.1|BM142986
genomic: AATGCAAGGGATTCCACCAGATATCCTGGCTGCTCATTATGGTGAAGAAGgtaatcttgt ... tttaatccagAGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGC
EST: AATGCAAGGGATTCCACCAGATATCCTGGCTGCTCATTATGGTGAAGAAG AGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGCEST: gi|209723203|gb|BW675149.1|BW675149
genomic: AATGCAAGGGATTCCACCAGATATCCTGGCTGCTCATTATGGTGAAGAAGgtaatcttgt ... tttaatccagAGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGC
EST: AATGCAAGGGATTCCACCAGATATCCTGGCTGCTCATTATGGTGAAGAAG AGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGCEST: gi|5058152|gb|AI736628.1|AI736628
genomic: AATGCAAGGGATTCCACCAGATATCCTGGCTGCTCATTATGGTGAAGAAGgtaatcttgt ... tttaatccagAGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGC
EST: AATGCAAGGGATTCCACCAGATATCCTGGCTGCTCATTATGGTGAAGAAG AGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGCEST: gi|14258943|gb|BG881851.1|BG881851
genomic: AATGCAAGGGATTCCACCAGATATCCTGGCTGCTCATTATGGTGAAGAAGgtaatcttgt ... tttaatccagAGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGC
EST: AATGCAAGGGATTCCACCAGATATCCTGGCTGCTCATTATGGTGAAGAAG AGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGC
genomic: AATGCAAGGGATTCCACCAGATATCCTGGCTGCTCATTATGGTGAAGAAGgtaatcttgt ... tttaatccagAGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGC
acatgaaatgttttaatctcctttttcacaattgtgtattttatttttaatccagAGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGCTTGTAGGTGGAATGATTCCACCTCCTTTGGGTACAGGATATCCTTCGCG
ttttaat putative branch site (score: 3)
ttttattttt CT-rich tract
tttttcacaattgtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgagatacaactttctatgaatattgttaccgatggtaaaaagaaacatgaaatgttttaatctcctttttcacaattgtgtattttatttttaatccagAGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGCTTGTAGGTGGAATGATTCCACCTCCTTTGGGTACAGGATATCCTTCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - ctatgaa
- - - - - - - - - - - - tgttacc
- - - - - - - - - - - - - - - -gatggta
- - - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - catgaaa