1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtacataggagtattatgttatatccaatcacgtctttgcttagattttgtggcagttaagctaatattgtgtatcttgatttttgcttgcactttgaagATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTAAATTCACATGATCATTTCAGAGACTGGAGACTGGATGTTGATAACATGTCCTATGAG
species | Glycine max |
transcript | GLYMA05G34270.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTACATACTATCGTCATGTTAGAGATCCTTCCTCTGATGGCTTTGCTGAG ATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTAAATTCACATEST: gi|21888066|gb|BQ741279.1|BQ741279
genomic: CTACATACTATCGTCATGTTAGAGATCCTTCCTCTGATGGCTTTGCTGAGgttgcctcta ... cactttgaagATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTAAATTCACAT
EST: CTACATACTATCGTCATGTTAGAGATCCTTCCTCTGATGGCTTTGCTGAG ATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTAAATTCACAT
genomic: CTACATACTATCGTCATGTTAGAGATCCTTCCTCTGATGGCTTTGCTGAGgttgcctcta ... cactttgaagATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTAAATTCACAT
ttttgtggcagttaagctaatattgtgtatcttgatttttgcttgcactttgaagATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTAAATTCACATGATCATTTCAGAGACTGGAGACTGGATGTTGATAACATGTCCTATGAG
taatattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacataggagtattatgttatatccaatcacgtctttgcttagattttgtggcagttaagctaatattgtgtatcttgatttttgcttgcactttgaagATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTAAATTCACATGATCATTTCAGAGACTGGAGACTGGATGTTGATAACATGTCCTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - ccaatca
- - - - - - - - - - - - - - - - gtctttg
- - - - - - - - - - - - - - - - - - - - - - - -ttgtggc