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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaagttattggcaatgtgatttctgtgtcatgatgttctacttaacgaaaatataatttcattctagataatgaccagtaggaatgacaattttgcttctctgcgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAACTGCTCCTACTGTTCAAAG

Basic information

species Glycine max
transcript GLYMA05G33140.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5753618|gb|AI960905.1|AI960905
EST:     GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG                         GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgcgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: gi|14258428|gb|BG881336.1|BG881336
EST:     GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG                         GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgcgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: gi|209704779|gb|BW673431.1|BW673431
EST:     GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG                         GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgcgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: gi|213608120|gb|DB970801.1|DB970801
EST:     GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG                         GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgcgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: gi|208192364|gb|GD993740.1|GD993740
EST:     GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG                         GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgcgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: gi|298164571|gb|HO014216.1|HO014216
EST:     GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG                         GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgcgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: gi|151395988|gb|EV265865.1|EV265865
EST:     GGTGAGGTTGTTGAACATGGAGCACTAACTGACAGCAAAACCATAGAAAG                         GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgcgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
EST: gi|209717619|gb|BW679699.1|BW679699
EST:     GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAG                         GCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA
genomic: GGTGAGGTTGTTGAACATGGAGCACTCACTGACAGCAAAACCATAGAAAGgtgaaagtta ... tgcgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcattctagataatgaccagtaggaatgacaattttgcttctctgcgtttcagGCTTCCAGTTGGATCTCGAGTTGTTGGGGCCTTCATCATGCCTTGTGGCAACTGCTCCTACTGTTCAAAG
                                  ttttgcttctctgc  CT-rich tract
        tagataat  TA-rich tract