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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagattggttttgtgcttcctttctttgactctggtatcttgttactgttgtggaagttttcttacagtgttaccgaagaatgaattgcagGTAGTCCCAGGGTTGAAGGCGATGAAGAGGAAGATGACACTGATGACTTGGACAATGAGTTTGATTATGGGGATGTTGATGCTCTGGGCCCACAACCAAT

Basic information

species Glycine max
transcript GLYMA05G32100.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32100.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G64740.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagattggttttgtgcttcctttctttgactctggtatcttgttactgttgtggaagttttcttacagtgttaccgaagaatgaattgc-agGTAGTCCCAGGGTTGAAGGCGATGAAGAGGAAGATGACACTGATGACTTGGACAATGAGTTTGATTATGGGGATGTTGATGCTCTGGGCCCACAACCAAT-
      || ||| | || |        ||  || |||| | |||| | ||| |  ||  || |  |    |    |       |   |||  ||| ||||| || |||||||| ||||||||||||||||||| |||||| || |||||||||||||| |||||  ||  ||  | |  |     |  |    | 
-----gttcgttgtttgttagaccaaattt-ctttggttttttgtgaatgtagaagattttctgatttgttcggcctatgttgttgtttgttagGAAGTCCAAGAGTTGAAGGTGATGAAGAGGAAGATGACATTGATGATTTAGACAATGAGTTTGAGTATGGAAATAATGG-GATTGGATTTGATCAGGTTTC

upper sequence: GLYMA05G32100.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0031g02060.t01 (Vitis vinifera), 3'ss of exon 2
gtgagattggttttgtgcttcctttctttgactctggtatcttgttac-tgttgtggaagttttcttacagtgttaccga-----agaatgaattgcagGTAGTCCCAGGGTTGAAGGCGATGAAGAGGAAGATGACACTGATGACTTGGACAATGAGTTTGATTATGGGGATGTTGATGCTCTGGGCCCACAACCAAT----
              ||   | | |||||  |    |  ||    |  |         ||| ||| | | | | |  | ||     || |||| ||||||| ||||||||||||||||||||||| || || || || | ||||||  | ||  |||||||||||||||   ||  | || ||  || | |||||  | |    
--------------gtctctgcattcttcaatgtggagattccatggcacagcccttaagctttgtga-attatctctgataagcagcatgatttgcaggcagTCCCAGGGTTGAAGGCGATGAGGAAGAGGACGATATTGATGATCTAGAACATGAGTTTGATTATGCAAATTCTAATACTTGGGCCACACAAGAAGTTGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttgttactgttgtggaagttttcttacagtgttaccgaagaatgaattgcagGTAGTCCCAGGGTTGAAGGCGATGAAGAGGAAGATGACACTGATGACTTGGACAATGAGTTTGATTATGGGGATGTTGATGCTCTGGGCCCACAACCAAT
                       ttcttac  putative branch site (score: 2)
                     ttttctta  TA-rich tract