1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatagcaatgatgttgtttgtcatttttagtcaacttagtaaattcaccaataaattaatattaggtcaattgttgcttctttaagtatctgcatgccattgtcttacttgaatcaataaaattgcagAATAGATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCTTGTTG
species | Glycine max |
transcript | GLYMA05G31730.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGAATCTGGGAGCGTTCATGCTCCTCTTGATGAAGAGCTGATTCTAAAG AATAGATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCTTEST: gi|192322857|gb|FK014788.1|FK014788
genomic: TGGAATCTGGGAGCGTTCATGCTCCTCTTGATGAAGAGCTGATTCTAAAGgtatagcaat ... aaaattgcagAATAGATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCTT
EST: TGGAATCTGGGAGCGTTCATGCTCCTCTTGATGAAGAGCTGATTCTAAAG AATAGATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCTTEST: gi|27425845|gb|CA937365.1|CA937365
genomic: TGGAATCTGGGAGCGTTCATGCTCCTCTTGATGAAGAGCTGATTCTAAAGgtatagcaat ... aaaattgcagAATAGATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCTT
EST: GGAATCTGGGAGCGTTCATGCTCCTCTTGATGAAGAGCTGATTCTAAAAG AATAGATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCT
genomic: GGAATCTGGGAGCGTTCATGCTCCTCTTGATGAAGAGCTGATTCTAAA-Ggtatagcaat ... aaaattgcagAATAGATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCT
ttgcttctttaagtatctgcatgccattgtcttacttgaatcaataaaattgcagAATAGATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCTTGTTG
gtcttac putative branch site (score: 3)
ttgaatcaataaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagcaatgatgttgtttgtcatttttagtcaacttagtaaattcaccaataaattaatattaggtcaattgttgcttctttaagtatctgcatgccattgtcttacttgaatcaataaaattgcagAATAGATCACAAGAGACCCAGCCATATTTAAATGGACGCTGTATTTATCTTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA