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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtctccaattaaaaatgtggcaaagtgacaactaaacattaagctctcatcaaccattcttggacataacatccatcatgtatacctgtccagtgcttccactactcattcatatgtaaactaattcatcgctcatacaagttttcaccgttcaaaatttgtgtatcagACATCACTCCGGGAGCTGACAAGTCTAGGCATAAAAAACTCAGAGAACCTTGCAATTCCTAGTGTCAGAAACGAT

Basic information

species Glycine max
transcript GLYMA05G31720.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31720.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G21960.1 (Arabidopsis thaliana), 3'ss of exon 2
gtcagtctccaattaaaaatgtggcaaagtgacaactaaacattaagctctcatcaaccattcttggacataacatccatcatgtatacctgtcc--agtgcttccactactcattcatatgtaaactaattcatcgctcatacaagttttcaccgttcaaaatttgtgtatcagACATCACTCCGGGAGCTGACAAGTCTAGGCATAAAAAACTCAGAGAACCTTGCAATTCCTAGTGTCAGAAACGAT
                                                                || | ||      |   || ||  | | |||  |    ||     |  |||  ||  ||  | || |   |       |  |  |        |     ||  |||||||||||||||| ||||||||||||| ||| || || || ||  ||||||  || || || ||||||||||| ||||||
---------------------------------------------------------------gtgtatatcgatctctctatctaagcttatccttacgatttgttaaaaccatcgattagtcgattagtcagtaagagtgaagaagtgatgtgtcttttttttcttgtatcagACATCACTGCGGGAGCTGACAACTCTCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaaactaattcatcgctcatacaagttttcaccgttcaaaatttgtgtatcagACATCACTCCGGGAGCTGACAAGTCTAGGCATAAAAAACTCAGAGAACCTTGCAATTCCTAGTGTCAGAAACGAT
    aactaat  putative branch site (score: 2)
                                    ttcaaaattt  TA-rich tract