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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgctcttagtgttcagttttttaatgtggctagatttcttttgacaaggaaaccaggatcctaattgatgacagttaaaaacatgattttaaattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAATCTCGGTATGATTTCTTTGAGAAATG

Basic information

species Glycine max
transcript GLYMA05G31630.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31630.1 (Glycine max), 3'ss of exon 2
lower sequence: AT4G39660.1 (Arabidopsis thaliana), 3'ss of exon 2
--------ttgctcttagtgttcagttttt--taatgtggctagatttcttttgacaaggaaaccaggatcctaattgatgacagttaaaaacatgattttaaattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAATCTCGGTATGATTTCTTTGAGAAATG
          | | | |     ||  | |   | |||| | ||| ||||| |||       | | ||||  |    || |             |||||||  |  |||||||||| || ||||| |||||||| |||||||| |||||  ||||||||||||||||  |  | || |||||||  || |  |||||||| ||||||||||
gtacttgagagttttaaacaaacaagtctgaatgatgtagttaggtttctcttgttggtttatcgaggaatcagcatgctc-----------tatgatttgga--tgcagGTTGTGTACTTTGTGAATTCTGGCTCAGAAGCTAATGAGCTAGCAATGATGATGGCTAGGCTTTACACTGGTAGCCTTGAGATGATTTCCTTGAGAAATG

upper sequence: GLYMA05G31630.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0031g01330.t01 (Vitis vinifera), 3'ss of exon 2
------ttgctcttagtgttcagttttttaatgtggctagatttcttttgacaaggaaa-ccaggatcctaattgatgacagttaaaaacatgattttaaattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAATCTCGGTATGATTTCTTTGAGAAATG
      |  |    |    |   |  |||  ||    || || |||   | |||  |   ||| ||   ||  || ||||  || ||  |||  | | ||| |||||||||| |||||||| || ||||| |||||||| ||||||||||||||| ||||||| ||  |||||| ||||||||| ||||||||||| || |||||||
atgggatgacatcgaaaaattcctggtttgttgaatataaatctct---ggcaaaaatttccatgaggatatctggtgac--tttaactcat--tgtcaaaatgcagGTTGTGTATTTTGTGAACTCTGGATCAGAAGCCAATGAATTAGCAATGCTGATGGCACGACTATATAGTGGTAATCTTGGTATGATTTCCTTAAGAAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaggaaaccaggatcctaattgatgacagttaaaaacatgattttaaattgcagGTTGTTTATTTTGTAAATTCTGGTTCAGAAGCAAATGAATTAGCAATGATGATGGCCCGTTTATATACTGGTAATCTCGGTATGATTTCTTTGAGAAATG
                            agttaaaaacatgatt  TA-rich tract