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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctatggttttacttttcaacatcttgattgtgtccttattctgtgaagaaatatgtgcttcattgtttgagttgtttccatttgtgcatattttggtttttgtatttgtgatctggtaaacttcttcaaccaacatgttcttgatttttgaaatcttgaagGCAGAAAAACTTTCAAGGAGAAGAGAAGTGTCCAATGTGGCTTTGGATTTTTCTGTGAGAACTGCAACCACACACACTCCACAATTTTTGGGTCTGCCAC

Basic information

species Glycine max
transcript GLYMA05G30460.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30460.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv10s0092g00170.t01 (Vitis vinifera), 3'ss of exon 2
gtatgctatggttttacttttcaacatcttgattgtgtccttattctgtgaagaaatatgtgcttcattgtttgagttgtttccatttgtgcatattttggtttttgtatttgtgatctggtaaacttcttcaaccaacatgttcttgatttttgaaatcttgaagGCAGAAAAACTTTCAAGGAGAAGAGAAGTGTCCAATGTGGCTTTGGATTTTTCTGTGAGAACTGCAACCACACACACTCCACAATTTTTGGGTCTGCCAC
                                                     ||||      ||      |  ||   ||    |||    | |  |      | |  |||||| | |    || |||||          |||    | | | |  || ||||||||||| || ||| ||| ||| ||||||||| | ||||||| ||||||||| || || ||||| |||||||| |||||||| |||||  ||||||| || |
-----------------------------------------------------aaatgcaaattttgccactcaagactttgttgttttatgagaaataaaaaatgg--tttgtgctttat--aagttctta---------gtttggtaatatcgttattttgaagGCAGAGAAGCTTGCAAAGAGGAGAGAAGTGGCAAATGTGGTTTTGGATTTCTCGGTTAGAACCGCAACCACCCACACTCCTCAATTCCTGGGTCTACCTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgatctggtaaacttcttcaaccaacatgttcttgatttttgaaatcttgaagGCAGAAAAACTTTCAAGGAGAAGAGAAGTGTCCAATGTGGCTTTGGATTTTTCTGTGAGAACTGCAACCACACACACTCCACAATTTTTGGGTCTGCCAC
                                tcttgat  putative branch site (score: 4)
                                  ttgatttttgaaat  TA-rich tract