1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgaaactccagttttgattagagaataatacccaaagcatttatgtttgtcccctttttttgagtttaacttactttcctttcaatttatttgctttcagGGAGAGTGTATATGGTTGATTTTGGAAATCTTTCAGCTCTGGAGTATCTGTGTATGAGAGGAATCCAGTGGTGCTGGGATGCCATTTGCAAAATGCTGAG
species | Glycine max |
transcript | GLYMA05G30340.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTCCCTGAAACCAAGCATTTGAGGAATCTTTCCATATCCAACAGTGCAG GGAGAGTGTATATGGTTGATTTTGGAAATCTTTCAGCTCTGGAGTATCTGT
genomic: GGTCCCTGAAACCAAGCATTTGAGGAATCTTTCCATATCCAACAGTGCAGgtagttaact ... ttgctttcagGGAGAGTGTATATGGTTGATTTTGGAAATCTTTCAGCTCTGGAGTATCTGT
tttgtcccctttttttgagtttaacttactttcctttcaatttatttgctttcagGGAGAGTGTATATGGTTGATTTTGGAAATCTTTCAGCTCTGGAGTATCTGTGTATGAGAGGAATCCAGTGGTGCTGGGATGCCATTTGCAAAATGCTGAG
aacttac putative branch site (score: 2)
tttgctttc putative PPT
tttttttgagtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaactccagttttgattagagaataatacccaaagcatttatgtttgtcccctttttttgagtttaacttactttcctttcaatttatttgctttcagGGAGAGTGTATATGGTTGATTTTGGAAATCTTTCAGCTCTGGAGTATCTGTGTATGAGAGGAATCCAGTGGTGCTGGGATGCCATTTGCAAAATGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- -aactcca
- - - - - - - - - - - - - - -acccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctttca