1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaaaattgatgtttaggtgctttgctaagagaccactgtatggcgatgttatcatatcatgttttgtatcttacatttctctttgttttactttcctaagAGGATACCTTGAAGACCTTGAAAGAAAAGGTAAAAGAGCCTTCAGTGCCAGAGCCAGAACCTGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGA
species | Glycine max |
transcript | GLYMA05G30150.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATCTTGTGACAACAGGAGGGAAGTGCATGATCTTAAAATGGGTGACAG AGGATACCTTGAAGACCTTGAAAGAAAAGGTAAAAGAGCCTTCAGTGCCAGEST: gi|192333661|gb|FK025772.1|FK025772
genomic: AGATCTTGTGACAACAGGAGGGAAGTGCATGATCTTAAAATGGGTAACAGgttggtcttt ... ctttcctaagAGGATACCTTGAAGACCTTGAAAGAAAAGGTAAAAGAGCCTTCAGTGCCAG
EST: AGATCTTGTGACAACAGGAGGGAAGTGCATGATCTTAAAATGGGTAACAG AGGATACCTTGAAGACCTTGAAAGAAAAGGTAAAAGAGCCTTCAGTGCCAGEST: gi|298163204|gb|HO011937.1|HO011937
genomic: AGATCTTGTGACAACAGGAGGGAAGTGCATGATCTTAAAATGGGTAACAGgttggtcttt ... ctttcctaagAGGATACCTTGAAGACCTTGAAAGAAAAGGTAAAAGAGCCTTCAGTGCCAG
EST: AGATCTTGTGACAACAGGAGGGAAGTGCATGATCTTAAAATGGGTAACAG AGGATACCTTGAAGACCTTGAAAGAAAAGGTAAAAGAGCCTTCAGTGCCAG
genomic: AGATCTTGTGACAACAGGAGGGAAGTGCATGATCTTAAAATGGGTAACAGgttggtcttt ... ctttcctaagAGGATACCTTGAAGACCTTGAAAGAAAAGGTAAAAGAGCCTTCAGTGCCAG
atgttatcatatcatgttttgtatcttacatttctctttgttttactttcctaagAGGATACCTTGAAGACCTTGAAAGAAAAGGTAAAAGAGCCTTCAGTGCCAGAGCCAGAACCTGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGA
atcttac putative branch site (score: 3)
tcttacatttctcttt CT-rich tract
tttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaattgatgtttaggtgctttgctaagagaccactgtatggcgatgttatcatatcatgttttgtatcttacatttctctttgttttactttcctaagAGGATACCTTGAAGACCTTGAAAGAAAAGGTAAAAGAGCCTTCAGTGCCAGAGCCAGAACCTGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - tgatgtt
- - - - - - - -ggtgctt
- - - - - - - - - - - tgctaag
- - - - - - - - - - - - - - - -accactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtt