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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcaccgtctttttcgtgacataccaattccgtgtaactggcgtttttattgtgtgtttttgtgagatgtcatttggagaaagtgtttgatagtgaaattagtgagagattgaatctgaaggaaacgtgttgctaatgctggctagGTAGAGGATCTTTCGAGGGAACCACAGGTGGAACGTGAACTGATGCTCATAAAAGTGCATGCGGATCCGAAACACCATGCGGAG

Basic information

species Glycine max
transcript GLYMA05G30130.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258620|gb|BE346767.1|BE346767
EST:     TGCTGCGCCAAGTCATGGAGCAGCTTCAGAAACTCGTCAATGTCTTAAAG                         GTAGAGGATCTTTCGAGGGAACCACAGGTGGAACGTGAACTGATGCTCATA
genomic: TGCTGCGCCAAGTCATGGAGCAGCTTCAGAAACTCGTCAATGTCTTAAAGgttcaccgtc ... tgctggctagGTAGAGGATCTTTCGAGGGAACCACAGGTGGAACGTGAACTGATGCTCATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgaaattagtgagagattgaatctgaaggaaacgtgttgctaatgctggctagGTAGAGGATCTTTCGAGGGAACCACAGGTGGAACGTGAACTGATGCTCATAAAAGTGCATGCGGATCCGAAACACCATGCGGAG
                                       tgctaat  putative branch site (score: 2)
     aattagt  TA-rich tract