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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaacttaacctttgagcaattgctcttctcaattatcattctgaatgttcattggtgtaccattctatctatatacaagaatatgtgtagtgtactattttattgttattgaagaatctcatttactggtttcttaacagGCATCTGCTACTACTACTACTACTACTGACAATAGCTGTGAGTCTGTGGTAGTGAGTGGTCAACACCAACCGCAAAACCCCAAAACTCAGCATCCCCAGT

Basic information

species Glycine max
transcript GLYMA05G30000.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30000.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G34710.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagtaacttaacctttgagcaattgctcttctcaattatcattctgaatgttcattggtgtaccattctatctatatacaagaatatgtgtagtgtactattttattgttattgaagaatctcatttactggtttcttaacagGCATCTGCTACTACTACTACTACTACTGACAATAGCTGTGAGTCTGTGGTAGTGAGTGGTCA---ACACCAACCGCAAAACCCCAAAACTCAGCATCCCCAGT------
                                                || ||||| |  |  || |||   ||| | |  || | |   |    || |  ||||| ||     ||||   | | || |     ||| ||   | | |       || ||   || || || ||||| ||||||||||||||||| |||||||||||   ||| |||| ||||||||| ||  |||||||||  ||        
----------------------------------------------gtaaagttcactttt-cactattt--tctgtctctaaaactcaattctatgaagcattttgtt-----tgaaagttgttatctt----ttttttggaatgtag-

upper sequence: GLYMA05G30000.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G30490.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagtaacttaacctttgagcaattgctcttctcaattatcattctgaatgt-tcattggtgtaccattctatctatatacaagaatatgtgtagtgtactattttattgttattgaagaatctcatttactggtttcttaacagGCATCTGCTACTACTACTACTACTACTGACAATAGCTGTGAGTCTGTGGTAGTGAGTGGTCAACA---CCAACCGCAAAACCCCAAAACTCAGCATCCCCAGT------
                        |   || |   |    |  | || ||||  |  |||   |   ||  |   |   |  |    ||| |||  | ||  | ||   |||| ||  ||| |   | |       |   |     |  |||    || ||   || || || ||||| ||||||||||||||||| ||||||||||| ||    || | ||||||||| | |  ||||||||| |||       
-----------------------gtaagtccttgaatcccttttgctaaatgcattgttgagttgttatctttgatgcttgtatatgtatttgttctttaagagttctctgttgttagagagtg--actggtgaaatctctgtgttgtgtcttagGCTTCTGGGACGACCACAGACAACAGCTGTGAGTCTGTGGTCGTGAGTGGTCAGCAACGTCAGCAGCAAAACCCAACACATCAGCATCCTCAGCGTGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtagtgtactattttattgttattgaagaatctcatttactggtttcttaacagGCATCTGCTACTACTACTACTACTACTGACAATAGCTGTGAGTCTGTGGTAGTGAGTGGTCAACACCAACCGCAAAACCCCAAAACTCAGCATCCCCAGT
                                            tttctt  CT-rich tract
          tattttattgttattg  TA-rich tract