1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtactctctctctatacatagtcagatcttagacgaagtaagcaatgtctgatgcgattcgtttcagATGCTCGTCGACGACATTGGCGACGTCACTATCACCAACGACGGTGCCACGATTCTCAAGATGCTTGAAGTGGAGCATCCTGCTGCCAAG
species | Glycine max |
transcript | GLYMA05G29870.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCGTTGGCCTCGACAAG ATGCTCGTCGACGACATTGGCGACGTCACTATCACCAACGACGGTGCCACGEST: gi|213606653|gb|DB959065.1|DB959065
genomic: CCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCGTTGGCCTCGACAAGgtactctctc ... ttcgtttcagATGCTCGTCGACGACATTGGCGACGTCACTATCACCAACGACGGTGCCACG
EST: CCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCGTTGGCCTCGACAAG ATGCTCGTCGACGACATTGGCGACGTCACTATCACCAACGACGGTGCCACGEST: gi|16278540|gb|BI942958.1|BI942958
genomic: CCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCGTTGGCCTCGACAAGgtactctctc ... ttcgtttcagATGCTCGTCGACGACATTGGCGACGTCACTATCACCAACGACGGTGCCACG
EST: CCGGTGCCAACATCGTCAAAAGCTCTTTAGGCCCCGTTGGCCTCGACAAG ATGCTCGTCGACGACATTGGCGACATCACTATCACCAACGACGGTGCCACGEST: gi|16278153|gb|BI942753.1|BI942753
genomic: CCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCGTTGGCCTCGACAAGgtactctctc ... ttcgtttcagATGCTCGTCGACGACATTGGCGACGTCACTATCACCAACGACGGTGCCACG
EST: CCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCGTTGGCCTCGACAAG ATGCTCGTCGACGACATTGGCGACGTCACTATCACCAACGACGGTGCCACG
genomic: CCGTTGCCAACATCGTCAAAAGCTCTTTAGGCCCCGTTGGCCTCGACAAGgtactctctc ... ttcgtttcagATGCTCGTCGACGACATTGGCGACGTCACTATCACCAACGACGGTGCCACG
tatacatagtcagatcttagacgaagtaagcaatgtctgatgcgattcgtttcagATGCTCGTCGACGACATTGGCGACGTCACTATCACCAACGACGGTGCCACGATTCTCAAGATGCTTGAAGTGGAGCATCCTGCTGCCAAG
gtctgat putative branch site (score: 4)
ttcgtttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactctctctctatacatagtcagatcttagacgaagtaagcaatgtctgatgcgattcgtttcagATGCTCGTCGACGACATTGGCGACGTCACTATCACCAACGACGGTGCCACGATTCTCAAGATGCTTGAAGTGGAGCATCCTGCTGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC