Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttgtcatataacattcataaaagaattttatcttaaatgatttgtctttttgtggtggttctgtatattgatgtgcgtaaaactgtcttctgatccagGACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG

Basic information

species Glycine max
transcript GLYMA05G29700.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393188|gb|EV263063.1|EV263063
EST:     AGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAG                         GACTTCCAGAAAGAAATTGCTAAAGTAGCAGAAACATTTACAGCTATAGGT
genomic: AGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAGgtatgcaatt ... tctgatccagGACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGT
EST: gi|209698264|gb|BW667553.1|BW667553
EST:     AGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAG                         GACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGT
genomic: AGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAGgtatgcaatt ... tctgatccagGACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGT
EST: gi|213618487|gb|DB963388.1|DB963388
EST:     AGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAG                         GACTTCCAGAAAGAAATTGTTAAAGCAGC
genomic: AGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAGgtatgcaatt ... tctgatccagGACTTCCAGAAAGAAATTGTTAAAGCAGC
EST: gi|151413137|gb|EV282945.1|EV282945
EST:     AGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTACAGGGAAG                         GACTTCCGGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGT
genomic: AGAGGCACCACCAGCTGGAAAAGCTGTACAGGGCCACACGTGCAGGGAAGgtatgcaatt ... tctgatccagGACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGT
EST: gi|208181147|gb|GD980186.1|GD980186
EST:     CACGTGCAGGGAAG                         GACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGT
genomic: CACGTGCAGGGAAGgtatgcaatt ... tctgatccagGACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctttttgtggtggttctgtatattgatgtgcgtaaaactgtcttctgatccagGACTTCCAGAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG
                                            ttctgat  putative branch site (score: 3)
                                       ctgtcttct  CT-rich tract
                    tatattgat  TA-rich tract