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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgctgagttgtcatttttttgttcttcagtgggaatttagagtttttgtgtgttgattaaagcctttgttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG

Basic information

species Glycine max
transcript GLYMA05G29080.7
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G29080.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv10s0003g01240.t01 (Vitis vinifera), 3'ss of exon 2
gtgagtgctgagttgtcatttttttgttcttcagtgggaatttagagtttttgtgtgttgattaaagcctttgttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG
||||||  |   |||    |    || | |    |     ||  ||| ||||  | |||   |     | |   |||||||||||| || |||||||| |||||  | || ||||| ||||| ||  | ||||  ||||||||||||||||| ||  ||||||| ||||||
gtgagtattt--ttggttctgacgtgatttatgctctagtttgggagatttttagggtt---tgggttcgtgtgtggttgcagGAAAGGCGACTATTATCGGTATTTGGCGGAGTTTAAGTCTGGCAACGAGAAGAAAGAGGCTGCTGATCAGTCACTGAAAGCTTATCAG

upper sequence: GLYMA05G29080.2 (Glycine max), 3'ss of exon 2
lower sequence: PP1S201_25V6.1 (Physcomitrella patens), 3'ss of exon 2
----gtgagtgctgagttgtcatttttttgttcttcagtgggaatttagagtttttgtgtgt-------tgattaaagcctttgttgg------ttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG
    || | | ||     |    | |  |  ||||||   ||| | |   |||| ||            ||||    | || || |||      ||  |||||||| ||||| ||||||||||| || ||||||||  | || | |||||||||||| |||||||| || ||  |||| || || |||
atcggttaattcttgaccggtcctatagtcgtcttcaagaggagtgtctggtttgtgctgacagaagtctgatgtttgtctgtgatgggcggggttctagGAAGGGAGACTACTACCGGTACCTGGCGGAGTTCAAAACTGGGGCTGAGAGAAAAGAAGCTGCTGACCAATCTTTGAAGGCCTACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208266480|gb|GE063219.1|GE063219
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         AAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|7686518|gb|AW757166.1|AW757166
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCG
EST: gi|254328642|gb|GR833014.1|GR833014
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|207770217|gb|GD742307.1|GD742307
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTG-CTTTTTCT-CAAAAT                         NAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|254333165|gb|GR850415.1|GR850415
EST:     ACCTAGTGTCTTTTTTCTAC-AAAT                         GAAGGGGGACTATTACCCGGTACCTCGCCAGAGTTCAAGTCCCGGTGATGA
genomic: ACCTAGTGTC-TTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTA-CCGGTACCTCG-CAGAGTTCAAGT-CCGGTGATGA
EST: gi|10709621|gb|BF009345.1|BF009345
EST:     TTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: TTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|193569971|gb|FK526722.1|FK526722
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|254328641|gb|GR833013.1|GR833013
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|207686788|gb|GD668370.1|GD668370
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTC
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTC
EST: gi|298178990|gb|HO024725.1|HO024725
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|5058166|gb|AI736642.1|AI736642
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|298198736|gb|HO042099.1|HO042099
EST:     CTTATTCCCTCTAGCTCACCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|193540325|gb|FK494815.1|FK494815
EST:     CTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|17519552|gb|BM188594.1|BM188594
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|193724885|gb|FK659233.1|FK659233
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|17518586|gb|BM187628.1|BM187628
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|10846261|gb|BF069189.1|BF069189
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|14011311|gb|BG726242.1|BG726242
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGATGA
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGA-GA
EST: gi|5666653|gb|AI930689.1|AI930689
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|193541596|gb|FK498354.1|FK498354
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|6502305|gb|AW203678.1|AW203678
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTNTNTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|21889084|gb|BQ742297.1|BQ742297
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|254333164|gb|GR850414.1|GR850414
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|208154066|gb|GD951871.1|GD951871
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|298191378|gb|HO038857.1|HO038857
EST:     CTTATTCCCACTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|193705946|gb|FK647152.1|FK647152
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|254347253|gb|GR853502.1|GR853502
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|193708168|gb|FK648130.1|FK648130
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|19270324|gb|BM886580.1|BM886580
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|254336492|gb|GR842671.1|GR842671
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|151394632|gb|EV264503.1|EV264503
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|10843848|gb|BF067096.1|BF067096
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|7233997|gb|AW569338.1|AW569338
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|192309537|gb|FK000969.1|FK000969
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|7795822|gb|AW781219.1|AW781219
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|193572269|gb|FK530014.1|FK530014
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|10231553|gb|BE800441.1|BE800441
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|6482683|gb|AW201922.1|AW201922
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|254336493|gb|GR842672.1|GR842672
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: gi|193537717|gb|FK497650.1|FK497650
EST:     CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT                         GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcagtgggaatttagagtttttgtgtgttgattaaagcctttgttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG
                           tgttgat  putative branch site (score: 4)
                                       cctttgtt  putative PPT
          aatttagagttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtgctgagttgtcatttttttgttcttcagtgggaatttagagtttttgtgtgttgattaaagcctttgttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT