1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtgctgagttgtcatttttttgttcttcagtgggaatttagagtttttgtgtgttgattaaagcctttgttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG
species | Glycine max |
transcript | GLYMA05G29080.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT AAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|7686518|gb|AW757166.1|AW757166
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGEST: gi|207770217|gb|GD742307.1|GD742307
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTG-CTTTTTCT-CAAAAT NAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|193569971|gb|FK526722.1|FK526722
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|207686788|gb|GD668370.1|GD668370
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCEST: gi|298178990|gb|HO024725.1|HO024725
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTC
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|10709621|gb|BF009345.1|BF009345
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: TTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|5058166|gb|AI736642.1|AI736642
genomic: TTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|298198736|gb|HO042099.1|HO042099
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCACCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|193540325|gb|FK494815.1|FK494815
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|17519552|gb|BM188594.1|BM188594
genomic: CTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|193724885|gb|FK659233.1|FK659233
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|254333165|gb|GR850415.1|GR850415
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: ACCTAGTGTCTTTTTTCTAC-AAAT GAAGGGGGACTATTACCCGGTACCTCGCCAGAGTTCAAGTCCCGGTGATGAEST: gi|17518586|gb|BM187628.1|BM187628
genomic: ACCTAGTGTC-TTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTA-CCGGTACCTCG-CAGAGTTCAAGT-CCGGTGATGA
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|5666653|gb|AI930689.1|AI930689
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|193541596|gb|FK498354.1|FK498354
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|6502305|gb|AW203678.1|AW203678
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTNTNTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|254328641|gb|GR833013.1|GR833013
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|21889084|gb|BQ742297.1|BQ742297
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|254328642|gb|GR833014.1|GR833014
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|254333164|gb|GR850414.1|GR850414
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|208154066|gb|GD951871.1|GD951871
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|14011311|gb|BG726242.1|BG726242
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGATGAEST: gi|151394632|gb|EV264503.1|EV264503
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGA-GA
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|298191378|gb|HO038857.1|HO038857
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCACTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|193705946|gb|FK647152.1|FK647152
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|254347253|gb|GR853502.1|GR853502
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|10846261|gb|BF069189.1|BF069189
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|193708168|gb|FK648130.1|FK648130
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|7795822|gb|AW781219.1|AW781219
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|19270324|gb|BM886580.1|BM886580
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|254336492|gb|GR842671.1|GR842671
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|10843848|gb|BF067096.1|BF067096
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|254336493|gb|GR842672.1|GR842672
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|192309537|gb|FK000969.1|FK000969
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|193572269|gb|FK530014.1|FK530014
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|7233997|gb|AW569338.1|AW569338
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|10231553|gb|BE800441.1|BE800441
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|6482683|gb|AW201922.1|AW201922
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGEST: gi|193537717|gb|FK497650.1|FK497650
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
EST: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAAT GAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
genomic: CTTATTCCCTCTAGCTCATCTGGTGAACCTAGTGTCTTTTTCTACAAAATgtgagtgctg ... ttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAG
cttcagtgggaatttagagtttttgtgtgttgattaaagcctttgttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG
tgttgat putative branch site (score: 4)
cctttgtt putative PPT
aatttagagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgctgagttgtcatttttttgttcttcagtgggaatttagagtttttgtgtgttgattaaagcctttgttggttgcagGAAGGGGGACTATTACCGGTACCTCGCAGAGTTCAAGTCCGGTGATGAGAGAAAAGAGGCTGCTGATCATTCCATGAAAGCGTATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT