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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctttccttttacttctgcttctgcttctgtttgcagtttgttccaagttttagttatcaacatcaaattgcatagaaagtgttctgtagtgtagggggggcatagttagttttgaattagcaattttgtggtgaaatatgaaaatatttatttatttatttttggtctgagtcagGTTGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAG

Basic information

species Glycine max
transcript GLYMA05G28940.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G28940.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0004g00560.t01 (Vitis vinifera), 3'ss of exon 1
gtacctttccttttacttctgcttctgcttctgtttgcagtttgttccaagttttagttatcaacatcaaattgcatagaaagtgttctgtagtgtagggggggcatagttagttttgaattagcaattttgtggtgaaatatgaaaatatttatttatttatttttggtctgagtcagGTTGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAG
                                                                                  ||    |  | | ||         |    | | |  ||| |     || ||  |     |    || ||  | |  ||| | ||  |    |   |||| || |||||||||||  |||| |||||||| ||||| |||||||| |||||||| || |||| |||||| || | |||| |||
----------------------------------------------------------------------------------gtcagatacaatttatatatc-tgtgaaaattctcaaatcaatgtgttagtaatagttaactttaaaatcaact--tttgtctt--gctcaatgtagGTGGGGTTTGAGATGATCAATGCCTTTGCTGAATCACAAGGGATTCCAATGGACACAGTTCATTGCAAAGCAATCTTTGGACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197087|gb|HO041830.1|HO041830
EST:     TTGTGGGGCTGGGCAACCCTGGCGAGAAGTTCAAAGGAACCAGACACAAT                         GTTGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTCCTATG
genomic: TTGTGGGGCTGGGCAACCCTGGCGAGAAGTTCAAAGGAACCAGACACAATgtacctttcc ... tctgagtcagGTTGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTCCTATG
EST: gi|192313288|gb|FK005060.1|FK005060
EST:     TTGTGGGGCTGGGCAACCCTGGCGAGAAGTTCAAAGGAACCAGACACAAT                         GTTGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTCCTATG
genomic: TTGTGGGGCTGGGCAACCCTGGCGAGAAGTTCAAAGGAACCAGACACAATgtacctttcc ... tctgagtcagGTTGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTCCTATG
EST: gi|192316096|gb|FK007157.1|FK007157
EST:     TTGTGGGGCTGGGCAACCCTGGCGAGAAGTTCAAAGGAACCAGACACAAT                         GTTGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTCCTATG
genomic: TTGTGGGGCTGGGCAACCCTGGCGAGAAGTTCAAAGGAACCAGACACAATgtacctttcc ... tctgagtcagGTTGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTCCTATG
EST: gi|192313289|gb|FK005061.1|FK005061
EST:     TTGTGGGGCTGGGCAACCCTGGCGAGAAGTTCAAAGGAACCAGACACAAT                         GTTGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTCCTATG
genomic: TTGTGGGGCTGGGCAACCCTGGCGAGAAGTTCAAAGGAACCAGACACAATgtacctttcc ... tctgagtcagGTTGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTCCTATG
EST: gi|192316097|gb|FK007158.1|FK007158
EST:     TTGTGGGGCTGGGCAACCCTGGCGAGAAGTTCAAAGGAACCAGACACAAT                         GTTGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTCCTATG
genomic: TTGTGGGGCTGGGCAACCCTGGCGAGAAGTTCAAAGGAACCAGACACAATgtacctttcc ... tctgagtcagGTTGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTCCTATG
EST: gi|298169742|gb|HO021102.1|HO021102
EST:     TTGTGGGGCTGGGCAACCCTGGCGAGAAGTTCAAAGGAACCAGACACAAT                         GTTGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTCCTATG
genomic: TTGTGGGGCTGGGCAACCCTGGCGAGAAGTTCAAAGGAACCAGACACAATgtacctttcc ... tctgagtcagGTTGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTCCTATG
EST: gi|192323363|gb|FK016374.1|FK016374
EST:     TTGTGGGGCTGGGCAACCCTGGCGAGAAGTTCAAAGGAACCAGACACAAT                         GTTGGCTTTGAGATGATTGATGCACTTGCTGAGTCACAGGGGATTCCTATG
genomic: TTGTGGGGCTGGGCAACCCTGGCGAGAAGTTCAAAGGAACCAGACACAATgtacctttcc ... tctgagtcagGTTGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTCCTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattttgtggtgaaatatgaaaatatttatttatttatttttggtctgagtcagGTTGGCTTTGAGATGATTGATGCATTTGCTGAGTCACAGGGGATTCCTATGGACACTGTCCATTCCAAAGCCATTTCTGGAAAAG
     ttgtggtgaaatatga  TA-rich tract