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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacaccactaaacagtcactttggatttacttgcacgcgtatgcgcatgtacacacacatacacaaacactgacaaggttcaagaagttcactgttacgtaagacatcggttttcttgaaacaaaatccttatttaagtcagctttagcatatttcagATCAGGCCGCATTTATGTGGTTGACACAAAAGCAAATCCAAGGTCTCCATCTTTGCACAAAGTTGTTGAGCCAGAAGACATTATAAGTAAGACTGGATTA

Basic information

species Glycine max
transcript GLYMA05G28400.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213598706|gb|DB964272.1|DB964272
EST:     TATGGAGATCCAACAGCAGTTCGGCGATATCTGATTTTGCCTTCACTGGT                         ATCAGGCCGCATTTATGTGGTTGACACAAAAGCAAATCCAAGGTCTCCATC
genomic: TATGGAGATCCAACAGCAGTTCGGCGATATCTGATTTTGCCTTCACTGGTgtaagacacc ... catatttcagATCAGGCCGCATTTATGTGGTTGACACAAAAGCAAATCCAAGGTCTCCATC
EST: gi|7146995|gb|AW508917.1|AW508917
EST:     TATGGAGATCCAACAGCAGTTCGGCGATATCTGATTTTGCCTTCACTGGT                         ATCAGGCCGCATTTATGTGGTTGACACAAAAGCAAATCCAAGGTCTCCATC
genomic: TATGGAGATCCAACAGCAGTTCGGCGATATCTGATTTTGCCTTCACTGGTgtaagacacc ... catatttcagATCAGGCCGCATTTATGTGGTTGACACAAAAGCAAATCCAAGGTCTCCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatcggttttcttgaaacaaaatccttatttaagtcagctttagcatatttcagATCAGGCCGCATTTATGTGGTTGACACAAAAGCAAATCCAAGGTCTCCATCTTTGCACAAAGTTGTTGAGCCAGAAGACATTATAAGTAAGACTGGATTA
                   aaaatccttatttaa  TA-rich tract