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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaagctcgatttgacaatattgatttattagttcatgtcttgtgattgacagaaaaaaaataatgctgtgtggtggactatttccatgtgaatcaccccttgtacagGTAAAGGACCTGTGGAAAGTGAATATGAGACATCAAGAGGCAACTCAGGTTCTGAACAAGGATATTATATCTCATTTTGTTCTACGTCTGGTGTATTGCA

Basic information

species Glycine max
transcript GLYMA05G28150.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193567186|gb|FK524685.1|FK524685
EST:     TTTCTGATGGTATGTCACGGGGGAAAAAAGCGGAAGAAATGGAGAATTTG                         GTAAAGGACCTGTGGAAAGTGAAT
genomic: TTTCTGATGGTATGTCACGGGGGAAAAAAGCGGAAGAAATGGAGAATTTGgtaaaaagct ... ccttgtacagGTAAAGGACCTGTGGAAAGTGAAT
EST: gi|209706858|gb|BW661494.1|BW661494
EST:     TTTCTGATGGTATGTCACGGGGNNNNNNNGCGGAAGAAATGGAGAATTTG                         GTAAAGGACCTGTGGAAAGTGAATATGAGACATCAAGAGGCAACTCAGGTT
genomic: TTTCTGATGGTATGTCACGGGGGAAAAAAGCGGAAGAAATGGAGAATTTGgtaaaaagct ... ccttgtacagGTAAAGGACCTGTGGAAAGTGAATATGAGACATCAAGAGGCAACTCAGGTT
EST: gi|208286215|gb|GE086441.1|GE086441
EST:     TTTCTGATGGTATGTCACGGGGGAAAAAAGCGGAAGAAATGGAGAATTTG                         GTAAAGGACCTGTGGAAAGTGAATATGAGACATCAAGAGGCAACTCAGGT
genomic: TTTCTGATGGTATGTCACGGGGGAAAAAAGCGGAAGAAATGGAGAATTTGgtaaaaagct ... ccttgtacagGTAAAGGACCTGTGGAAAGTGAATATGAGACATCAAGAGGCAACTCAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaaaataatgctgtgtggtggactatttccatgtgaatcaccccttgtacagGTAAAGGACCTGTGGAAAGTGAATATGAGACATCAAGAGGCAACTCAGGTTCTGAACAAGGATATTATATCTCATTTTGTTCTACGTCTGGTGTATTGCA
                                        tcacccctt  CT-rich tract
     aaataat  TA-rich tract