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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtttcattagtaatcacttttttgtgtttgtagaatcgacacttattctctaaacgacgacgtttataatctctctcaatctgagcatttttttaatcgtctttcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG

Basic information

species Glycine max
transcript GLYMA05G27940.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27940.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G67430.2 (Arabidopsis thaliana), 3'ss of exon 2
gtaggtttcattagtaatcacttttttgtgtttgtagaatcgacacttattctctaaacgacgacgtttataatctctctcaatctgagcatttttttaatcgtctttcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
                                 |||       | | |  | || |              |    | | |  ||||  |   |  |    | || ||   | |||||||||||||||||||||  |||| ||||||||||| || |||
---------------------------------gtaagtaaagctccttgtatcaacttcttagtaccatttcgttgttttgatctttgtggtaatcctttggttttgattttgcagCTTGCAAGGCTAGAGGATCCGATCTTAGGGTTCACTTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298166298|gb|HO009269.1|HO009269
EST:     GTGAAGTACTCAAGGGAGCCTGATAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|18719541|gb|BM523201.1|BM523201
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|7686619|gb|AW757276.1|AW757276
EST:     GGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|6566144|gb|AW233783.1|AW233783
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|6952016|gb|AW424084.1|AW424084
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|254324956|gb|GR834381.1|GR834381
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|16996874|gb|BM086246.1|BM086246
EST:     GCCGCCATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GCCGCCATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|5058385|gb|AI736917.1|AI736917
EST:     AGCCGCCATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: AGCCGCCATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|13788824|gb|BG651415.1|BG651415
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|19271182|gb|BM887438.1|BM887438
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|5510348|gb|AI856673.1|AI856673
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|18848858|gb|BM567969.1|BM567969
EST:     CTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|15813051|gb|BI785326.1|BI785326
EST:     TGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: TGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|209696899|gb|BW660464.1|BW660464
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|18730282|gb|BM525790.1|BM525790
EST:     CGCCATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: CGCCATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|6913074|gb|AW394604.1|AW394604
EST:     ATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: ATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|12496577|gb|BG047134.1|BG047134
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|12496627|gb|BG047159.1|BG047159
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|15200901|gb|BI424589.1|BI424589
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|14990091|gb|BI315764.1|BI315764
EST:     GGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|298176448|gb|HO026683.1|HO026683
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|26269293|gb|CA820356.1|CA820356
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|298178897|gb|HO024632.1|HO024632
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|6455153|gb|AW185836.1|AW185836
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTTATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|298172000|gb|HO021592.1|HO021592
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGCTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|7145918|gb|AW507840.1|AW507840
EST:     GGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGGTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|14990125|gb|BI315798.1|BI315798
EST:     GGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|298184857|gb|HO030070.1|HO030070
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAATCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|7042501|gb|AW472395.1|AW472395
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|24136303|gb|BU926813.1|BU926813
EST:     TGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: TGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|22930393|gb|BU547532.1|BU547532
EST:     GCCGCCATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GCCGCCATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|16347198|gb|BI972793.1|BI972793
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|213596920|gb|DB964127.1|DB964127
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|13562772|gb|BG550992.1|BG550992
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|27426431|gb|CA937951.1|CA937951
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|10709618|gb|BF009342.1|BF009342
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|5666572|gb|AI930608.1|AI930608
EST:     ACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: ACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|5126866|gb|AI748602.1|AI748602
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|13312171|gb|BG405831.1|BG405831
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
EST: gi|19269566|gb|BM885822.1|BM885822
EST:     GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGT                         CTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
genomic: GTGAAGTACTCAAGGGAGCCTGACAATCCAACCAAGTgtaggtttca ... tcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacgtttataatctctctcaatctgagcatttttttaatcgtctttcatatgcagCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAG
                                ttttaat  putative branch site (score: 3)
                                      tcgtctttc  CT-rich tract
                         agcatttttttaat  TA-rich tract