1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...gattgtgtttaggataccgatgtcgacgatatttgactcagcatgcaagcattctcacttgctttttttttgggtggtgttggtggtgtttctatttcagGACTCCAAAATCTTTGATGGCTGGATTAATGTGGATTGGTGTGAAGGATGGCAAATACCACTTGCGGCATTTTTGCCGACATGAGGATGACCTAAGTACT
species | Glycine max |
transcript | GLYMA05G27900.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTTATTGGGGAACTTATCGTCCTCACGTGTATCTCGGAATTCGCGCCAG GACTCCAAAATCTTTGATGGCTGGATTAATGTGGATTGGTGTGAAGGATGGEST: gi|254323178|gb|GR835786.1|GR835786
genomic: TTGTATTGGGGAACTTATCGTCCTCACGTGTATCTCGGAATTCGCGCCAGgtatgttacc ... tctatttcagGACTCCAAAATCTTTGATGGCTGGATTAATGTGGATTGGTGTGAAGGATGG
EST: TTGTATTGGGGAACTTATCGTCCTCACGTGTATCTCGGAATTCGCGCCAG GACTCCAAAATCTTTGATGGCTGGATTAATGTGGATTGGTGTGAAGGATGG
genomic: TTGTATTGGGGAACTTATCGTCCTCACGTGTATCTCGGAATTCGCGCCAGgtatgttacc ... tctatttcagGACTCCAAAATCTTTGATGGCTGGATTAATGTGGATTGGTGTGAAGGATGG
caagcattctcacttgctttttttttgggtggtgttggtggtgtttctatttcagGACTCCAAAATCTTTGATGGCTGGATTAATGTGGATTGGTGTGAAGGATGGCAAATACCACTTGCGGCATTTTTGCCGACATGAGGATGACCTAAGTACT
ttctcac putative branch site (score: 2)
tttctatttc putative PPT
ttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattgtgtttaggataccgatgtcgacgatatttgactcagcatgcaagcattctcacttgctttttttttgggtggtgttggtggtgtttctatttcagGACTCCAAAATCTTTGATGGCTGGATTAATGTGGATTGGTGTGAAGGATGGCAAATACCACTTGCGGCATTTTTGCCGACATGAGGATGACCTAAGTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
gattgtg
- - - - - - - - - - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtggt