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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatcattctaatctttcttttctttttttatttgtaattttaaaaaaattgaatctatttgtatttgtttggtgattgacatttttgtggatgctctttctggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG

Basic information

species Glycine max
transcript GLYMA05G26630.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600472|gb|DB970324.1|DB970324
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|151402287|gb|EV272100.1|EV272100
EST:     CACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: CACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|254327807|gb|GR834772.1|GR834772
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|213593691|gb|DB971713.1|DB971713
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|209706563|gb|BW676111.1|BW676111
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|192324953|gb|FK015404.1|FK015404
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|5606771|gb|AI900869.1|AI900869
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|26047656|gb|CA784373.1|CA784373
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|213602225|gb|DB958485.1|DB958485
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: gi|151408492|gb|EV278300.1|EV278300
EST:     TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG                         TTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgtatttgtttggtgattgacatttttgtggatgctctttctggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG
                 gattgac  putative branch site (score: 3)
                                     ctctttctggtttt  putative PPT
     tatttgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgtatcattctaatctttcttttctttttttatttgtaattttaaaaaaattgaatctatttgtatttgtttggtgattgacatttttgtggatgctctttctggttttgcagTTAGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT