1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tccaatttatatttttctagttgttacactcattcattgaggtttaactgtagtgctgattcacttcgtataaattgtgttgcttccatgtggtttgcagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAATCATTTTCATTAGTAGCTGAGGAG
species | Glycine max |
transcript | GLYMA05G26250.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG GTTCACAAGCATTGGTCAGCCTTATACTTGAGAGAGAACTTCCTTCTGAATEST: gi|192294187|gb|FG986276.1|FG986276
genomic: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATGgttgagttat ... tggtttgcagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAT
EST: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG GTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAATEST: gi|192330285|gb|FK020570.1|FK020570
genomic: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATGgttgagttat ... tggtttgcagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAT
EST: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG GTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAATEST: gi|15813517|gb|BI785792.1|BI785792
genomic: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATGgttgagttat ... tggtttgcagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAT
EST: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG GTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAT
genomic: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATGgttgagttat ... tggtttgcagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAT
aactgtagtgctgattcacttcgtataaattgtgttgcttccatgtggtttgcagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAATCATTTTCATTAGTAGCTGAGGAG
tgctgat putative branch site (score: 3)
tataaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccaatttatatttttctagttgttacactcattcattgaggtttaactgtagtgctgattcacttcgtataaattgtgttgcttccatgtggtttgcagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAATCATTTTCATTAGTAGCTGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - cactcat
- - - - - - - - - - - - - - - - - - - - - - - - - -agtgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttcc