1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtctggatgttaattagtgattacgtgtttgttaattgatcgaatcgaattcttctctttacgtgcatgtatgttgattaacgattgcgtgttttgccgcgtgtaactaaattgcgattgctttcagGACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGGTGGAGGAGAGAAGCCAAGAGGATCGAGAGAGATGGTGGAAAATGGGATT
species | Glycine max |
transcript | GLYMA05G26240.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAG GACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGGEST: gi|13480594|gb|BG509937.1|BG509937
genomic: AGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAGgtctggatgt ... ttgctttcagGACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGG
EST: GCTCGCTGCGATCTCAAG GACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGGEST: gi|213611573|gb|DB960853.1|DB960853
genomic: GCTCGCTGCGATCTCAAGgtctggatgt ... ttgctttcagGACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGG
EST: AGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAG GACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGGEST: gi|254340891|gb|GR854619.1|GR854619
genomic: AGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAGgtctggatgt ... ttgctttcagGACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGG
EST: AGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAG GACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGGEST: gi|298181983|gb|HO026158.1|HO026158
genomic: AGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAGgtctggatgt ... ttgctttcagGACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGG
EST: AGATCTTTCGAGAATTGATCGGATTATTCGGTGCTCGCTGCGATCTCAAG GACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGGEST: gi|254346278|gb|GR859891.1|GR859891
genomic: AGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAGgtctggatgt ... ttgctttcagGACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGG
EST: AGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAG GACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGGEST: gi|213600098|gb|DB964304.1|DB964304
genomic: AGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAGgtctggatgt ... ttgctttcagGACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGG
EST: AGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAG GACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGGEST: gi|298168261|gb|HO014436.1|HO014436
genomic: AGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAGgtctggatgt ... ttgctttcagGACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGG
EST: AGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAG GACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGG
genomic: AGATCTTTCGAGAATTGACCGGATTATTCGGTGCTCGCTGCGATCTCAAGgtctggatgt ... ttgctttcagGACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGG
gttgattaacgattgcgtgttttgccgcgtgtaactaaattgcgattgctttcagGACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGGTGGAGGAGAGAAGCCAAGAGGATCGAGAGAGATGGTGGAAAATGGGATT
aactaaa putative branch site (score: 2)
ttgctttc putative PPT
taactaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctggatgttaattagtgattacgtgtttgttaattgatcgaatcgaattcttctctttacgtgcatgtatgttgattaacgattgcgtgttttgccgcgtgtaactaaattgcgattgctttcagGACTGCCGGCGGCGGCCATTGAGCCTGTGCCGGAGAGCAGTGTGTCGACGGTGGAGGAGAGAAGCCAAGAGGATCGAGAGAGATGGTGGAAAATGGGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA