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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtgttttttcttgctgaactggtctttacactttactccttcaatttttgctgattcgtgcttcatcatgctttgtgtttcagGGGCTGAATCAGATTCACACAAATGGCTTTGTGCCGACCATTGTGGATGAAAGGCC

Basic information

species Glycine max
transcript GLYMA05G26100.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192331570|gb|FK019959.1|FK019959
EST:     GCAACAAAAGGGCATCGGAAATGGCTGTTTATGAGCAGTTTCGAGGCGAG                         GAGCTGAATCAGATTCACACAAATGGCTTTGTGCCGACCATTGTGGATGAA
genomic: GCAACAAAAGGGCATCGGAAATGGCTGTTTATGAGCAGTTTCGAGGCGAGgtactgtgtt ... tgtgtttcagGGGCTGAATCAGATTCACACAAATGGCTTTGTGCCGACCATTGTGGATGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactttactccttcaatttttgctgattcgtgcttcatcatgctttgtgtttcagGGGCTGAATCAGATTCACACAAATGGCTTTGTGCCGACCATTGTGGATGAAAGGCC
                    tgctgat  putative branch site (score: 3)
           ttcaattttt  TA-rich tract