1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tgcttgtttttcctgcttttgattattgtcgtgaattaaaatatttatgctaatttttgggaggtcagttttctgatggagctttgttttatgtcttcagGTGTCTTTCTTGCTGGGGGTTATTCCAGTTTTTGTTTCATGGATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGT
species | Glycine max |
transcript | GLYMA05G25780.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCCGGGGGCAG GTGTCTTTCTTGCTGGGGGTTATTCCAG-TTTTGTTTCATGGATATATTCEST: gi|208244849|gb|GE038946.1|GE038946
genomic: CGCC-GGGGCAGgtgcgtcatt ... atgtcttcagGTGTCTTTCTTGCTGGGGGTTATTCCAGTTTTTGTTTCATGGATATATTC
EST: ATCACGCCGGGGCAG GTGTCTTTCTTGCTGGGGGTTATTCCAGTTTTTGTTTCATGGAT
genomic: ATCACGCCGGGGCAGgtgcgtcatt ... atgtcttcagGTGTCTTTCTTGCTGGGGGTTATTCCAGTTTTTGTTTCATGGAT
tatgctaatttttgggaggtcagttttctgatggagctttgttttatgtcttcagGTGTCTTTCTTGCTGGGGGTTATTCCAGTTTTTGTTTCATGGATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGT
tgtcttc CT-rich tract
tttgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcttgtttttcctgcttttgattattgtcgtgaattaaaatatttatgctaatttttgggaggtcagttttctgatggagctttgttttatgtcttcagGTGTCTTTCTTGCTGGGGGTTATTCCAGTTTTTGTTTCATGGATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
tgcttgt
- - - - - tcctgct
- - - - - - - - - - - - - tgtcgtg
- - - - - - - - - - - - - - - - - - - - - -tttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatggag